FastQCFastQC Report
Sat 31 Dec 2022
SRR5843273.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843273.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59349
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTACGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT780.1314259717939645No Hit
TTGCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA770.12974102343763164No Hit
AGTTCAGGGGATAAAAGCTATACTCCATCTAAAATAAGACATGCCT670.11289153987430285No Hit
CTTATTGGGAAAGACACTGGCCTGTCTATGAAAGCTGAGTGTGTGT670.11289153987430285No Hit
TGCCGGGGGAACGCCACCTTTCTGAGTATCAATGCCAGCCGGGGGA650.1095216431616371No Hit
CAATATGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCC630.10615174644897132No Hit
TCATGTGGGGACTTCCAGCTGCCACTGAGATTTGACCTACAATACA630.10615174644897132No Hit
GGAACCGGGACGAGAACCGGCGAATGCAGGAGCTACGGATAGCGAG610.1027818497363056No Hit
TAGCCCTTTGTTTTCCTTACTAGAGTATCTTTCCCGCACCCCTAGG610.1027818497363056No Hit
ATCATAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT610.1027818497363056No Hit
TGATAGGGAGGTGATTTTATTTTCCTTATGGATGGGAAAAACAGAA600.1010969013799727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)