FastQCFastQC Report
Sat 31 Dec 2022
SRR5843272.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843272.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42447
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTACGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT570.13428510848823239No Hit
CAAGAGGGAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTGCCATGTC540.12721747119937804No Hit
AGGCTTGGGGGCAGTGGGCCGGGCGCGGTCTCTCCTTAGCTCCCGC530.12486159210309328No Hit
GTAATGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA480.11308219662166938No Hit
GTGGTGGGGGTGAAGGAACCTACCAAGGCCACCACACTCCTATTGT480.11308219662166938No Hit
TCTATGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT480.11308219662166938No Hit
GGCACCACACCTTCTACAATGAGCTGCGTGTGGCCCCTGAGGAGCA460.10837043842909981No Hit
CATACTGGGGAGTTTTCCTTGCTTTGTCCACATTGCTGGCATCAGG460.10837043842909981No Hit
ACTTCAGGGGAAGCCACACCGCTGTCTCAGACTCGAAGCCGAGGTT460.10837043842909981No Hit
GGTTGCGGGGAGTCTGTTAGGTTCTAACCAACCTAGTTTTCATTGT460.10837043842909981No Hit
GATTCGTGAGCTGCTCTTTGCCCTCAAGTTGGTCATTCAGGGTTCC460.10837043842909981No Hit
ATACCTGGGGGACCAGAGACCTCAAGTGTCACTTTCGAGGTCCAGC460.10837043842909981No Hit
ATTCATGGGGAACTAGCCTATCGCAGACGGTATCAACAGGAACATC450.10601455933281505No Hit
TATGAAGGGGAAGTTGGAAGGGACCAGGCCTCTGTGGGCCCCTTCT450.10601455933281505No Hit
AAAATAGGGGAGACAGGCAGGGCGGAGGCGCAGTCTGCACCATGGC440.10365868023653026No Hit
ATACGCGGGAGGGTTCCCGCAGCCATAGGTGATGTAAGGGTCCTGC440.10365868023653026No Hit
CACTTTGGGTAGAAGCAGGAGCAGGAACAGGATGAACAGTCTACCC440.10365868023653026No Hit
ACCTCTGGGAGTGCTGAATTGTCTCAAACCTTGGAAGGGAGGAAAT430.10130280114024548No Hit
ATCATGGGGGGCAGTGAGGGTGCTGCTCCATTCCCCAGGACGGCCC430.10130280114024548No Hit
ACTTAAGGGGAAGGTGAAGATGGCTGCCGCCCGGGCTGCGGCCCTG430.10130280114024548No Hit
AGACAAGGGGGGAGGAAGCAGCAAGGTGGGTCCTCAGGAACAGGAA430.10130280114024548No Hit
TAACATGGGAACATCCTCGTGTTAGATATTGAGGCTGCTTCGTGTC430.10130280114024548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)