FastQCFastQC Report
Sat 31 Dec 2022
SRR5843271.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843271.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40233
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGTAGGGGCATCACACCCCTGCACCTAGTTGCCTCATTCCCTAG540.13421817910670347No Hit
ATTCATGGGGAACTAGCCTATCGCAGACGGTATCAACAGGAACATC530.13173265727139413No Hit
CAAGAGGGAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTGCCATGTC500.12427609176546615No Hit
GATTCGTGAGCTGCTCTTTGCCCTCAAGTTGGTCATTCAGGGTTCC500.12427609176546615No Hit
TAACATGGGAACATCCTCGTGTTAGATATTGAGGCTGCTTCGTGTC500.12427609176546615No Hit
AATGTTGGGGAGACGTAATTCGTGAAGGAACCTACCAAGGCCACCA480.1193050480948475No Hit
TCCGAGTTGGGGTGATGATTAGGAAGGGATTGGCACACTTGGGTCC460.11433400442422888No Hit
CGCCGGGGTGTGCCCAGCTCGCTGAGCTCCCAGGCTTCCTTGCCCA450.11184848258891955No Hit
AACCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.11184848258891955No Hit
TATGAAGGGGAAGTTGGAAGGGACCAGGCCTCTGTGGGCCCCTTCT450.11184848258891955No Hit
CTGAATGGGAGTTTTCCTTGCTTTGTCCACATTGCTGGCATCAGGC440.10936296075361022No Hit
AGCCCGGGGAGTACATGGTAGTTCAGCCAATAGATGCCTAGTACGC430.1068774389183009No Hit
ATGCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC430.1068774389183009No Hit
ATACGCGGGAGGGTTCCCGCAGCCATAGGTGATGTAAGGGTCCTGC430.1068774389183009No Hit
ACCTCTGGGAGTGCTGAATTGTCTCAAACCTTGGAAGGGAGGAAAT420.10439191708299157No Hit
TTTCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.10439191708299157No Hit
CTCTACGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT420.10439191708299157No Hit
TCTGCAGGGCTGATGCCTTTGTCAGCAGGGCTGCCTAGCCTCCCCA420.10439191708299157No Hit
CACTAAGGGGCAAACAGAATGATGTCTTTGGAGAAGCTGATCAGTG420.10439191708299157No Hit
CATCATGGGAATGTCTATTGGCTTTCTAGGCTTTATTGTATGAGCC420.10439191708299157No Hit
CATAGCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT410.10190639524768225No Hit
GTGCTTGGGTTAGTAATGGAGGTGTATCAGAAACAGCTACACTCTC410.10190639524768225No Hit
ATTAGAGGGGAGAGCGCCGAGGGCCTCAGCCGAGTCCACAGCGGTG410.10190639524768225No Hit
CCAACTGGAACTGAGTTTATCTCCATTGACAACCTAGCTGCCCACA410.10190639524768225No Hit
AACAAGGGGCCTGTCACTAAGGACGCACTGAGGACAGCTTTGAACA410.10190639524768225No Hit
GGCTCCCTCTTTCTCCCCAGCCCAACTTGTCTCTTTCTTACTGGTT410.10190639524768225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)