FastQCFastQC Report
Sat 31 Dec 2022
SRR5843270.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843270.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50446
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATACCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT570.11299211037545098No Hit
CTCACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.11100979264956588No Hit
ATTACTGGGATGAGCCCACCACATATTCACAGTAGGATTAGATGTA530.10506283947191056No Hit
CTTGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.10506283947191056No Hit
AGACATGGGGAATGTGGACACACTGGAGCAAGTGGAGTTTATTGAT520.10308052174602546No Hit
ATTCGAGGGAGACATGGAGTTGGAAATGGCTTTCTTCGTAGGCCCT510.10109820402014036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)