FastQCFastQC Report
Sat 31 Dec 2022
SRR5843261.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843261.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29116
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCACAAGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGC500.17172688556120347No Hit
CTTCATGGGATTGTAAATGTGGCTGGTATTTACAGCAAATACTGTG490.16829234784997937No Hit
AAGAATGGGATTTGTCCACCTCCCCAGTCAGGAGCTCCGGCCCCGG470.16142327242753127No Hit
CTAAAAGGGGATGCCAGAATGTATGGTGTTCTCCCATGGAATGCTT440.15111965929385904No Hit
GACGCAGGGGGGGAGAAGCCGTACGTATGCACCCACTGTCAGCGGC430.14768512158263497No Hit
TTAGCTGGGATTCTCTCAAATCCACATGTGTGCCCTGAGTGCTGTG430.14768512158263497No Hit
GCTTATGGGAGAAGGGTGTCAAAGCAAGGATCTTTCGCCCTTAGAA420.1442505838714109No Hit
TTTTCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.1442505838714109No Hit
GCTATCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT410.14081604616018684No Hit
AAATCTGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT410.14081604616018684No Hit
ATAGTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT400.13738150844896277No Hit
ATCTATGGGGCAAGGAGCAGTAAGCCAGCTGCCAAAAAAAAGGCTA390.1339469707377387No Hit
AAGCAGGGGCTCTCGCCAGGCGTCCTCGTTGGAGTGACATCGTCTT390.1339469707377387No Hit
ACTGCTGGGGAGAGCTGTCCAGACTGGAAGCGAGGCTGTGCTGCTG390.1339469707377387No Hit
TACTCCAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC390.1339469707377387No Hit
CTATTGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG380.13051243302651463No Hit
TTACATGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA380.13051243302651463No Hit
GCACAGGGGATCACAGTGTGAAATCATTTTATGTATTTTGTTAGTA380.13051243302651463No Hit
TTTTAGGGGAGACGTTCGTGGTGGAGTGAGAGGTTCCCAGGGGAGG380.13051243302651463No Hit
AGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGT380.13051243302651463No Hit
CTACATGGGGGAGGAAGGCTGCCTCAAGTCTCCCTCAGGCCCCTAG370.12707789531529054No Hit
CGTAGCGGGACCAAGAAGACGTCAGTCGGCCCCAACCTGAGACGCA370.12707789531529054No Hit
ACCTTGGGGATCTCGGCTGCGGGATTGTCTTGGTGGGTGGTTCTAC370.12707789531529054No Hit
TACGTAGGGGAAGTGGTGTGCACTGAGTCACCTGGAGAGAACCAAG360.12364335760406649No Hit
GTGCGTGGGGTTGGGGATGAAGAGGACCTTACCACTGAGAGTGACG360.12364335760406649No Hit
TTAGTCGGGATGTCATGAGAAATTATTTTCTTAAGGGGTACTTCAA360.12364335760406649No Hit
ACGCTAGGGATCCAAGGGCAATGGCACTATACCCTCCCAACCTAGA360.12364335760406649No Hit
TCTACTGGGGAGTCTCCAAGATGGCCGCGTGGGGAAGGAGGCGTCT360.12364335760406649No Hit
CATTCAGGGGGGAATTCGGGGAATTGGATTTGCAGAGCATATTAGC360.12364335760406649No Hit
AGCCTTAGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG360.12364335760406649No Hit
AAGGCGGGGACACACACAAGAGGAAGGTGTAGGCAGCGTCTTTGTC350.12020881989284243No Hit
AATGCAGGGGGACATTTACATCGGAAAAGTCTCTCCCTACCTTAAT350.12020881989284243No Hit
CACATGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA340.11677428218161835No Hit
GCTTAAGGGGAAAAGGGGGTGCCCCTTTACCGCCACATTGCTGACT340.11677428218161835No Hit
ACTCGCGGGACAGCCCTGAGAACATGGGACTTCTTGATCCTGCAAC340.11677428218161835No Hit
TTGCTTGGGGGCGGCCGTCATGGCAGCCGAAGAGAAGGACCCGTTG340.11677428218161835No Hit
GTTTTCGGGATACATATGCAATAACATAGAGAAGCTCTGAGGATTA340.11677428218161835No Hit
TATGCGGGGGATCTGGGAGATTCTCAAAGTGGCACAGGAACACTTT340.11677428218161835No Hit
ACACTTGGGGCCTCCTGGTGGTCCTCACATGTCCTAGACTGGCTCA340.11677428218161835No Hit
CAAATAGGGGTTTCCCCCCGTGGTATTTCCTTCTAGGCATCGGGAA340.11677428218161835No Hit
TAACTGGGGGGCGGGGCAGGGGCCCACTGCGCCCTAAGACGCTGCT340.11677428218161835No Hit
TTAAATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.11677428218161835No Hit
CCACCTGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT340.11677428218161835No Hit
GCGCATGGGGAATCAGAAATTGTGGCTGGAATCCCACGCACTGACC340.11677428218161835No Hit
GTTGACGGCAGGATTTGGAATTATTTCACATGTAGTTACTTACTAC330.11333974447039429No Hit
TATCTGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG330.11333974447039429No Hit
AAATTTGGGACTTGAATTGATTAAGGCACAGATGTGTTTGGTCTAA330.11333974447039429No Hit
CTCCAAGGGCTCCCGTGGGGAGGGGCATCTTGAAGGCATATTTTGG330.11333974447039429No Hit
ATCAGGGGACCGTCGGCTGATCGTGGTTTTACTAGGCTAGACTAGC330.11333974447039429No Hit
TCATAGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC330.11333974447039429No Hit
TCAATTGGGTCAGCAGGGGGAGAGTGAGAAAACTAAAGAAAGTCGG330.11333974447039429No Hit
AGTGGGGGAGCCTGTCAGGCTGGACTTCTCAGTCCTTAGCCCGGGA330.11333974447039429No Hit
GACCGGGATAGGGGGAGGTGGACGCTTTTTCTATGTAAACAGAAAT320.1099052067591702No Hit
GTGCATGGGGAACTCCAGAGTGATGTTCTGGGGCAAAGAGCTACTA320.1099052067591702No Hit
CAGCAAGGGGTATACTTCGCTGAGAAGGTGAGCTCCCTGGGCAAGG320.1099052067591702No Hit
GGAGATGGGATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACT320.1099052067591702No Hit
GCAAACGGGACATGGTGGGCATGATAGCCAGCTTTTACAACACGGA320.1099052067591702No Hit
CTACAGGGGGAGATGACAGCAGGAGCATCAAGAGAAGCCTGTTTCT320.1099052067591702No Hit
TCACATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC320.1099052067591702No Hit
ACTGCAGGGTGAGGTTGTGGGTATTAGGCATCGAGGACAGTCCGGT310.10647066904794615No Hit
ACACGCGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG310.10647066904794615No Hit
AAATGGGGACCGAGGTGAAGGTCTCTTCCTGGGATGCAGTCCTGTC310.10647066904794615No Hit
TCAGCTGGACACACTGAAAGCGTGCTGTCTTCCAGGCACCTACGGG310.10647066904794615No Hit
CTACAAGGGACATGCACAGCGGTCAAACAGTATGTCCCAAGGGGAC310.10647066904794615No Hit
TAGTGAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA310.10647066904794615No Hit
CATGGCGGGACAATGACTGTTCCTATGAAGAAGCCACTTGTGTTCT310.10647066904794615No Hit
TTTTTGGGGGTTTATCCTAGAATCTGTTTGATACCTTTGCCAGTGA310.10647066904794615No Hit
TACGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.10647066904794615No Hit
ATGTTTGGGACTTATCAGGAACTGTGGAACCATGGAGAACATGACC310.10647066904794615No Hit
CATGTGGGGTACCAGAGTTTGCGGACAGCGATCCTGCCAACATTGT310.10647066904794615No Hit
CTGCCTGGGCCTGATTGGCCTGGGTGTGACGGTGTGTAACTAAAAT310.10647066904794615No Hit
GAGTTAGGGGTCTCTATTCACAAGGAAACCAGGCTCAGGGCCTGAC310.10647066904794615No Hit
GTCTCAGGGCGGCAAGGGCCTGAGCGCAACGGTAACAGGGGGCCAG310.10647066904794615No Hit
TACTTTGGGGGTAAAGCAACGCGGAGTCTACGCCGCTTCCAGGGCG310.10647066904794615No Hit
CTACCTGGGTATGCCACAACTAGATACATCAACATGATTTATCACA310.10647066904794615No Hit
TGTCAGGGAGAGCCCAGCAGTGTTGCCACAGCCCTGTGAGCACAGA310.10647066904794615No Hit
ACAGTGGGGACAGCCAGAGACAGAGTTTGTCTTCCCCCTGTCCCAT310.10647066904794615No Hit
ATACCTGGGACCGCAACCTAAACACAACTTTCTTTGATCCCGCTGG310.10647066904794615No Hit
TGAGCTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA310.10647066904794615No Hit
CTAGGTGGGGGAAAATGACAACACATTCCATGCATGGCTCATCTGG300.10303613133672207No Hit
ACCACAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG300.10303613133672207No Hit
AGACAAGGGATGACCAAGTTTTACAGGAAAACTCCAGTGATTTTCA300.10303613133672207No Hit
ACTTATGGGAGGGGCCGGAAGTTAGCGTCTCCTGGGTGAAGCGGCC300.10303613133672207No Hit
AAAGCTGGGGAAGATGCTGACAATGAAGATGCTGGCCCTGTGCTTG300.10303613133672207No Hit
TCTCGGGACTGGCCCCCAGAGCACCAAAACACACTGGAAACAGACA300.10303613133672207No Hit
GTCTACGGGCTATCTCCTAGGTTCAAGGACTTCATAAAAAGAACCT300.10303613133672207No Hit
GTTTGGGGTGACGAGTGGAGCATCATCAGTGAGGGAAAGATAGAGT300.10303613133672207No Hit
TCCTGGGATTGTGAGTAATATAGATTGGCGCTAGTAGATCACAGAA300.10303613133672207No Hit
TACACCGGGATTTGAAGTGATGCTGGCTACAGACCGTTCCCACTAT300.10303613133672207No Hit
TTACATGGGATTGACGGGCATGAGAAGCAACCATGAAAAGAAGTGA300.10303613133672207No Hit
CATAAAGGGAGACCAGGTCCCTTTCCCCACACCTCACCCTCCACAG300.10303613133672207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)