FastQCFastQC Report
Sat 31 Dec 2022
SRR5843254.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843254.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41986
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACCAGGGGTTTACAGAAGAGCCACCACGGGACCGGGCCTTAGTG680.16195874815414663No Hit
GTACACGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA650.1548135092649931No Hit
TACGCTCGGGGCCCTGTGGACCTTACTGCCAGTGAGTGTACGCTCG630.15005001667222406No Hit
ACGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCCA620.14766827037583957No Hit
CCATCCCATTCCCAACCCAAGACCCACTTGAAGGCACACAAAAGCT600.14290477778307056No Hit
ACGCACGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT580.13814128519030153No Hit
TGAGAAGGGGTACCTCTAAGTCAGGAGTGCAGTACAAAGGACATGT570.135759538893917No Hit
GGCGCTGGGGTTCCAGGCATGGAGGCAGGCGGGCTGGGCTGCGCTG570.135759538893917No Hit
TTTCTGGGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGG560.1333777925975325No Hit
TTCTTGCGGAAGCGCAAATTTGAGCAGATGAAGCAAGATAGGATCA550.130996046301148No Hit
TACGCAGGGGTCTTTCCGGACCTGGCCGAGCAGGAGGCGCCATCAT550.130996046301148No Hit
GCAAATGGGATGTCAAGACAGCCGTATGTGACATCCCACCCCGGGG540.12861430000476348No Hit
CCTCATGGGGGGCTCTGGACCGGGCGGCCACTGCGCAGAGTGGAGG540.12861430000476348No Hit
TCTTCCGGGAAGATGTTAGACGAGGCAATGTTGCTGGTGACAGCAA540.12861430000476348No Hit
TCCATTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC540.12861430000476348No Hit
CGCAATGGGGCGACAGGTGCGGCGCTGTTGGCGTAGTCCGGTCCAG530.126232553708379No Hit
TATGCCGGGAGGAAGTTCACTAGGACAAGGATGCTCTCTGACTTCC530.126232553708379No Hit
GATAGGGGATGCCACAACTAGATACATCAACATGATTTATCACAAT530.126232553708379No Hit
CTTGTAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG530.126232553708379No Hit
AACAATGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT520.12385080741199447No Hit
ACTTACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC520.12385080741199447No Hit
TCCGTGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC520.12385080741199447No Hit
TCTCTCGGGATCTCAATCAGGGGAGAGAGAAGTAAAGATGGGGGCC520.12385080741199447No Hit
TACACGGGGCCACCAAACTCATGCATATCACATAGTTAATCCAAGT520.12385080741199447No Hit
TATCTAGGGTGTGAAGAGTGATGGCTGACAGGTCCTCTGTATGTTT520.12385080741199447No Hit
TTCTTTGGGGAGGTCAGGGCTGACTTGATTTTTCTGAGATGGTCCT520.12385080741199447No Hit
TCTAACGGGGCGTTACTTCCGGCCTCCCTCTAGCTGCCATCTTGCG520.12385080741199447No Hit
TGTACAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT520.12385080741199447No Hit
TCATTAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT520.12385080741199447No Hit
CCATCTGGGGCAGTACCAGGATGCCACTGCTGAAGAGGGCGAGTTC510.12146906111560997No Hit
CGCCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC510.12146906111560997No Hit
TGTCCAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT510.12146906111560997No Hit
TGCGCTGGGGAAGAGGGTTATGGCCGGAGCCTGAGATACGCTGCTC510.12146906111560997No Hit
AGAACTGGGTGTGGACATCCACTATCTCCAGCCACTTGGCCACAAA500.11908731481922545No Hit
AATGCAGGGGAGTCATGCAGGTTTTAAGAAACTCCGGGTCGTGGCT500.11908731481922545No Hit
CGAACTGGGGGGGCGTAAGAGGCGCGCGGCGGCGGGGTGTCCCGGG500.11908731481922545No Hit
ATTACTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT500.11908731481922545No Hit
AGCAACCGGGGTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT500.11908731481922545No Hit
ACTTATGGGGAGACCAGCAATCGTGGTTCCGGAAGCCTGGTTGGCA500.11908731481922545No Hit
AATACTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT500.11908731481922545No Hit
TACCATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT500.11908731481922545No Hit
AATGTAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT490.11670556852284096No Hit
ATAAGCGGGGCAGCAAGTGGACTCCTGCTCCAAAGTGAAGCGCCAT490.11670556852284096No Hit
GCAACCGGGTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATTGC490.11670556852284096No Hit
GAATTAGGGGGACACACTGTATGAGCCTGAGCCACAGATCTGAGCC490.11670556852284096No Hit
TTAGCACGGGTCCTGGAGGAATAGGTACCAAGAAAAAAACGAACCT490.11670556852284096No Hit
CTAGCTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT490.11670556852284096No Hit
AAAACCGGGGGGAGTTGACCAGCCAACCGACTCTGCATTCATCTAG480.11432382222645644No Hit
CCCAGTAGGACCTATAGTGCAGCCATATCTCCAGGTCACGCTCAGG480.11432382222645644No Hit
ATTACAGGGACGCTCTTCCGATCTTCATATGGGGGGAGTTGACCAG480.11432382222645644No Hit
GCATTAGGGGGTATTAAGGAAACTGGAGCCCCAGGCAGTGTGAAAG480.11432382222645644No Hit
GCCTCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC480.11432382222645644No Hit
GCTCTTGGGGAAATGAAAGAAAAAGATCTATTGCAGATATCTGATG480.11432382222645644No Hit
TTAGTTGGGAGGGGGTTGAGGAATCTGTCGGAGGAAAATCGAGACA480.11432382222645644No Hit
AATCCCGGCGTCTCTGAGCTACCCTCCAGTGAAGAGAAGTCCCCTG480.11432382222645644No Hit
GTCTTTGGGGCTTTCGCGCTACCCGGGGACGGGTCCATACGGCGTT480.11432382222645644No Hit
ATCACTGGGAGAAGGATGCACCTGTGGACCAGCTAGGCGCCGAGCA480.11432382222645644No Hit
TTGACTGGGCTGATGGCAGCTGCTGTCACCAGCAAGTGGGTGGCTG480.11432382222645644No Hit
CGGAGTGGGCTAGCCGGGGAGGTACGGCGACAACAGGGGCGTCCGG470.11194207593007192No Hit
ACACTAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT470.11194207593007192No Hit
CTGCTGCGGGATGCCACAACTAGATACATCAACATGATTTATCACA470.11194207593007192No Hit
TTCACGGGGGCAAACGGAGCCTCAATATTTTTTATTTGCTTATTCC470.11194207593007192No Hit
TGCCGGGACTGCAGGACCGCTAGACGGACGACAACTTCTGCTCTGC470.11194207593007192No Hit
CCAGCCGGGTAGGATGTCTAAGGAGAAAATTGGGGCAGTAAGACTA470.11194207593007192No Hit
GCTGCGGGGCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCAGC460.10956032963368742No Hit
CGCGCGGGGCCACTGTGAGAGCTGTGGGATTTGTAGGATTGGTCCA460.10956032963368742No Hit
ATCCTAGGGGAGCTCCACCAGGGCCCGCTATCCACAGGAACCTTTC460.10956032963368742No Hit
GTATCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA460.10956032963368742No Hit
GATAATGGGGCCATTTCCCTCCAACCACCCATGGGGCAAGACTCCC460.10956032963368742No Hit
GCTAACGGGGAGAGCAAGGGTCGGTGGTTAGTACGCGTGCGCAGTA460.10956032963368742No Hit
TATATAGGGAACCGATCCACAAGGGAAACCTCACTGTGTTTGCCAA460.10956032963368742No Hit
TTCCGGGCTCCTCGCGGGGAGCGGGCGCAGAGCTCGGCAAGGCGCT460.10956032963368742No Hit
ACTGCTGGGAGGCACCTGCTCTGCTCTGAGCAAATGGCTGCTCTTC460.10956032963368742No Hit
TACGCGGGGCGGCGCCCGCTGGTCGGGCTGGCGGTGGCCGCCCTGG460.10956032963368742No Hit
GCACATGGGGGCAGTTTGTCTTCGCTGATCGGTGAGACTTCGAGCA460.10956032963368742No Hit
CATGTTGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACC460.10956032963368742No Hit
ACAGGTGGGGGAAATCAATGCCTGAGGCAGACTTCAGCTCCTGGAC450.1071785833373029No Hit
ATCACAGGGAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCAGGTCT450.1071785833373029No Hit
GCCAAGGGGAGAGCAAGATGGCGGCGCCCATGGAAGTGGTGGTGTG450.1071785833373029No Hit
GACGCCGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA450.1071785833373029No Hit
TCAGCCGGGGGTCTGTTCTGCACCAACTCAGAGTCTTGTTGGAGCT450.1071785833373029No Hit
CGATTAGGGGGCGTCAGCCCGGCCCACAGCGTCCAGTATAAAGTTA450.1071785833373029No Hit
GGTCTAGGGAGTGAGAAAGTTGCCGGCGTCCCGGGGGGAGTTGGCC450.1071785833373029No Hit
CTCAAAGGGGGCGGAGGAAAATGGCTGCGCCCCAGCCACAGGCTGC450.1071785833373029No Hit
CATACAGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT440.10479683704091841No Hit
GGCACCAGGTCACTACTTCAGTGGGGTCCAGAAGAGAGAGGAGGCA440.10479683704091841No Hit
GACCAAGGGGTGACATTTCTCCCACAGGCATGGCTTCTCAGAGCGC440.10479683704091841No Hit
CTGTTCGGGGGAAGGAGTTGACCAGCCAACCGACTCTGCATTCATC440.10479683704091841No Hit
GAGTCAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA440.10479683704091841No Hit
CCGCTGGGGGATAAATAGGGGGTCTCCACAGTGCCCTCTGCTCCTT440.10479683704091841No Hit
ACTGCAGGGGCCCGGGAGGAGAGAAGACGGGCGGCGTGCCATGGCG440.10479683704091841No Hit
TCTACTGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT440.10479683704091841No Hit
CAACGGGGACAGAGTCAGCTGACCTGAGCCAAGCCGGAAGAAGCTC440.10479683704091841No Hit
TCTGCAGGGAGCAGGCGCAGGTCAACGCAGCCATGGTGAAGATCAG440.10479683704091841No Hit
AGGTACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA440.10479683704091841No Hit
GCTACAGGGAGGACGAGAGAAGGCCAGCTCAGAGCAGGATGGCGGC430.10241509074453388No Hit
TAACAAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC430.10241509074453388No Hit
ACTTATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT430.10241509074453388No Hit
AGCCCAGGGAGAGTCCAAGGACATGGCGCATCTGGAAGTGGGACTG430.10241509074453388No Hit
CCCTCTTTCTCCCCAGCCCAACTTGTCTCTTTCTTACTGGTTTCAA430.10241509074453388No Hit
CTAAAAGGGGGGCTGAGCCGCGGCAGGAGAGTACTGAGAAGCGTCG430.10241509074453388No Hit
TCTTTAGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA430.10241509074453388No Hit
TCTTAGGGGGCAGTAGAAGTTAAACCAGAAATGTGTGCCTCATCAA430.10241509074453388No Hit
AACTATGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT430.10241509074453388No Hit
CATGTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG430.10241509074453388No Hit
ATATGCGGGGTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATTG430.10241509074453388No Hit
TTTAGCGGGGGGCCAGTTCAAGATCGGTCTGATCCACGGACACCAA430.10241509074453388No Hit
GTCTACGGGAGGCCTCATCATGTGTTCAACATGCTGAAGAAGTACG430.10241509074453388No Hit
TTGAGAGGGAGAGTCCCCAGATCACCTACACCCTCAAACTTGGTGG430.10241509074453388No Hit
ACGCAGGGGGGGAATTCCCCGGGCCAATTGCCTCTATAACTAGAGC430.10241509074453388No Hit
CGCCTAGGGAGCCGGGTGAAGCCCATCCGGGCAAGCCTTCCCTGGG430.10241509074453388No Hit
TCACGCGGGGGGAGGGACGTTGGAGAGTCATCCCGTATGATGTGCT430.10241509074453388No Hit
GCTTATGGGAGGTGCAGTTTGATGAGCCAGAGGCCACAGGGGGCGT420.10003334444814939No Hit
GACACCGGGTATGCCACAACTAGATACATCAACATGATTTATCACA420.10003334444814939No Hit
ACAATGGGGGGATAAGCAACAGGAAGTAGTGAAATCCCTTGGGGCT420.10003334444814939No Hit
AAATTTAGGGGAAGGAGTTGACCAGCCAACCGACTCTGCATTCATC420.10003334444814939No Hit
GAGAACGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT420.10003334444814939No Hit
CCTTCCGGGGGTCCCAGAGAGTCTCCTCTGGGTAGGCGGCTGAGTT420.10003334444814939No Hit
TAGCTAGGGCATCTACCTGTTTCAACTGCACATGAAGTTGTACATG420.10003334444814939No Hit
AGCAACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT420.10003334444814939No Hit
GAGCATGGGGAGACAACTCAACAATGGGTTACATGGCAGCAAAGAA420.10003334444814939No Hit
ACCAACGGGGCTCTCTGTCATTTGTAGATGAAGCTGCATGAGTCAC420.10003334444814939No Hit
GATAATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA420.10003334444814939No Hit
TTTACCGGGAGTGCGGGTGGCGCGCATGCGTGCTGGGTACACGTCG420.10003334444814939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)