FastQCFastQC Report
Sat 31 Dec 2022
SRR5843253.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843253.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39796
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCTCGGGATCTCAATCAGGGGAGAGAGAAGTAAAGATGGGGGCC650.16333299829128556No Hit
TCCATTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC620.15579455221630314No Hit
GCAAATGGGATGTCAAGACAGCCGTATGTGACATCCCACCCCGGGG610.15328173685797566No Hit
GTCTTTGGGGCTTTCGCGCTACCCGGGGACGGGTCCATACGGCGTT610.15328173685797566No Hit
AATGCAGGGGAGTCATGCAGGTTTTAAGAAACTCCGGGTCGTGGCT600.1507689214996482No Hit
ACTTATGGGGAGACCAGCAATCGTGGTTCCGGAAGCCTGGTTGGCA590.14825610614132073No Hit
AGCAACCGGGGTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT580.14574329078299325No Hit
TACGCGGGGCGGCGCCCGCTGGTCGGGCTGGCGGTGGCCGCCCTGG560.14071766006633832No Hit
TTAGCACGGGTCCTGGAGGAATAGGTACCAAGAAAAAAACGAACCT550.13820484470801084No Hit
CGCAATGGGGCGACAGGTGCGGCGCTGTTGGCGTAGTCCGGTCCAG540.13569202934968339No Hit
TTGGCCGGGGGCCGGCCCCGCCCCTAACGCCGGCCCCGCCCACACT540.13569202934968339No Hit
TCTCATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.1331792139913559No Hit
ATCGGGTCATGGCAGAGTACTACGAGAGCTCTAATTGTGCCATCCC520.13066639863302842No Hit
AATGTAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT520.13066639863302842No Hit
TTAGTTGGGAGGGGGTTGAGGAATCTGTCGGAGGAAAATCGAGACA520.13066639863302842No Hit
ACTGCTGGGAGGCACCTGCTCTGCTCTGAGCAAATGGCTGCTCTTC520.13066639863302842No Hit
TGTAAAGGGATGAGCAATAATGTCTATTGGCTTTCTAGGCTTTATT510.12815358327470097No Hit
AGAACTGGGTGTGGACATCCACTATCTCCAGCCACTTGGCCACAAA510.12815358327470097No Hit
TAGCTAGGGCATCTACCTGTTTCAACTGCACATGAAGTTGTACATG510.12815358327470097No Hit
TACCATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT510.12815358327470097No Hit
CCCAGTAGGACCTATAGTGCAGCCATATCTCCAGGTCACGCTCAGG500.1256407679163735No Hit
ACCTAGGGGTGGGCACCCAGAAGTTTATATTCTTATCCTCCCAGGA500.1256407679163735No Hit
GCAACCGGGTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATTGC500.1256407679163735No Hit
CAACGGGGACAGAGTCAGCTGACCTGAGCCAAGCCGGAAGAAGCTC500.1256407679163735No Hit
AGGCCAGGGGAACAATGCTGTGTAATAAAACAAGGTGAACCTTTAA490.12312795255804602No Hit
GCCCACCTACGGGGACCTCAACCACCTCGTGTCAGCCACCATGAGT490.12312795255804602No Hit
ACGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCCA480.12061513719971856No Hit
GGGGTTGGGGGTCCTTTGCACGGCATCTGGCCACAAAATGGCTGCC480.12061513719971856No Hit
CAGCGGGAAGGAAGCGGAAGTCCGGATTTTCAGCCGGCGCGTGAAG480.12061513719971856No Hit
TGCGTAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT480.12061513719971856No Hit
ATTAATGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA480.12061513719971856No Hit
GCGTCAGGCCTCGTCCGGCTCCTGCGTCAAGATATAGTAGCAGTTT470.11810232184139109No Hit
CCCTCTTTCTCCCCAGCCCAACTTGTCTCTTTCTTACTGGTTTCAA470.11810232184139109No Hit
AATTCCGGGGAAGCGGCGCACTGCCACCTACCGAGGGTGCTTCCCA470.11810232184139109No Hit
GAGTCAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA470.11810232184139109No Hit
TGATATGGGGTACAGGATGGTTTCACAACTGTCACCTCTGCCCCAG470.11810232184139109No Hit
CTCCTTGGGGGTTTTGTTATTTGTTTTAAGATTTAAAAGCTGGTTA470.11810232184139109No Hit
GGCGCTGGGGTTCCAGGCATGGAGGCAGGCGGGCTGGGCTGCGCTG470.11810232184139109No Hit
TCCGTGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC460.11558950648306363No Hit
CTAAAAGGGGGGCTGAGCCGCGGCAGGAGAGTACTGAGAAGCGTCG460.11558950648306363No Hit
TTCCGGGCTCCTCGCGGGGAGCGGGCGCAGAGCTCGGCAAGGCGCT460.11558950648306363No Hit
AACTATGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT460.11558950648306363No Hit
TCAAATGGGGTCTGACGGAAGTTAGAAGATGGCGGCGTCCGCAGTC460.11558950648306363No Hit
TATAGCCGGGGGAAGGAGTTGACCAGCCAACCGACTCTGCATTCAT460.11558950648306363No Hit
TCAACAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC460.11558950648306363No Hit
ACGCACGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT460.11558950648306363No Hit
GTACATGGGAGACCGCAGGGATGGCGGCAGGGCAGGGTGGGTGGCT450.11307669112473615No Hit
CTGTTCGGGGGAAGGAGTTGACCAGCCAACCGACTCTGCATTCATC450.11307669112473615No Hit
CAATTCGGGTACGGATTCGTTACTAACGTGTTGGACGCTAGTGGAA450.11307669112473615No Hit
CCTTCCGGGGGTCCCAGAGAGTCTCCTCTGGGTAGGCGGCTGAGTT450.11307669112473615No Hit
TCTACTGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT450.11307669112473615No Hit
TCACCAGGGGTTTACAGAAGAGCCACCACGGGACCGGGCCTTAGTG450.11307669112473615No Hit
GCTTAAGGGAAGGACAGAAGTAGCAAGGCCCGCTCTCCACACTCTT450.11307669112473615No Hit
CTCAAAGGGGGCGGAGGAAAATGGCTGCGCCCCAGCCACAGGCTGC450.11307669112473615No Hit
TTCTTGCGGAAGCGCAAATTTGAGCAGATGAAGCAAGATAGGATCA440.11056387576640868No Hit
ATTACAGGGACGCTCTTCCGATCTTCATATGGGGGGAGTTGACCAG440.11056387576640868No Hit
AGTTCGGGGGAGCTGTACGGTCGCACTGAACTCGGATAGGTCTCAG440.11056387576640868No Hit
CCATCCCATTCCCAACCCAAGACCCACTTGAAGGCACACAAAAGCT440.11056387576640868No Hit
GATAATGGGGCCATTTCCCTCCAACCACCCATGGGGCAAGACTCCC440.11056387576640868No Hit
TGTTCTGGGGCTCTCTTTCTGCCGCCATCTTGGTTCCGTGATCTCC440.11056387576640868No Hit
GCACATGGGGGCAGTTTGTCTTCGCTGATCGGTGAGACTTCGAGCA440.11056387576640868No Hit
TTTCATGGGGAAGGAGTTGACCAGCCAACCGACTCTGCATTCATCT440.11056387576640868No Hit
CTCCGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTTCA440.11056387576640868No Hit
TCGACCGGCTCATAAGAGGGAATACACCACGATCTGCAGGCTTGAA440.11056387576640868No Hit
TACCTGGGTCTCTCCAAAGAGAGCTTCCGCTCTTGCCTCTGAACGC440.11056387576640868No Hit
AATACTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT440.11056387576640868No Hit
CACCAGGGGGTAACCAGAATCGGAGCATGGAAGCACACAACATCCT440.11056387576640868No Hit
GATAATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA440.11056387576640868No Hit
CGTGGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC440.11056387576640868No Hit
GCTACAGGGAGGACGAGAGAAGGCCAGCTCAGAGCAGGATGGCGGC430.10805106040808121No Hit
CCATCTGGGGCAGTACCAGGATGCCACTGCTGAAGAGGGCGAGTTC430.10805106040808121No Hit
TCTAACGGGGCGTTACTTCCGGCCTCCCTCTAGCTGCCATCTTGCG430.10805106040808121No Hit
TGACATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT430.10805106040808121No Hit
GAATTAGGGGGACACACTGTATGAGCCTGAGCCACAGATCTGAGCC430.10805106040808121No Hit
GGTCTAGGGAGTGAGAAAGTTGCCGGCGTCCCGGGGGGAGTTGGCC430.10805106040808121No Hit
TATGCCGGGAGGAAGTTCACTAGGACAAGGATGCTCTCTGACTTCC430.10805106040808121No Hit
CTGCAGGGAGGCTCCGTGCTGGCAGCTCCACGAGCGCGCGTGCACA430.10805106040808121No Hit
AGAGATGGGGGCGGAAGTGCAGGCATCAGGGGGTTCTGTCCACGGT430.10805106040808121No Hit
TTGACTGGGCTGATGGCAGCTGCTGTCACCAGCAAGTGGGTGGCTG430.10805106040808121No Hit
CTTGTAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG430.10805106040808121No Hit
GCTATGGGGGACCCAGATTGAAGCAAGATGGCGAGCGCGCGGAACG420.10553824504975373No Hit
AAATTTAGGGGAAGGAGTTGACCAGCCAACCGACTCTGCATTCATC420.10553824504975373No Hit
ACAGGTGGGGGAAATCAATGCCTGAGGCAGACTTCAGCTCCTGGAC420.10553824504975373No Hit
ATCACAGGGAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCAGGTCT420.10553824504975373No Hit
GAGTGGGGGGGCGCGAAGCTGTCCGGGTTTCTGTCGGGCGGTGTTT420.10553824504975373No Hit
ATCAATGGGCATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACC420.10553824504975373No Hit
ATTATGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT420.10553824504975373No Hit
ACATCTACAGACACATTCTGGATACCGAGTAGAACTTGATTTCCCT420.10553824504975373No Hit
TACACGGGGTACATCAGCCACTATAATTATCGCAATTCCTACCGGT420.10553824504975373No Hit
TGCGCTGGGCAGAGTAGGCTCCTCACACAGCAGGGTGTGGAGACTG420.10553824504975373No Hit
TACTACGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA420.10553824504975373No Hit
CGCGCGGGGCCACTGTGAGAGCTGTGGGATTTGTAGGATTGGTCCA410.10302542969142627No Hit
CTCCCCAAGGCCTTGCTGGATCCCCGGCGCCCAGAGATCCCAACAG410.10302542969142627No Hit
GAGAACGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT410.10302542969142627No Hit
TCTAGAGGGGACTTTCTGTAATGAAAACTCAGACGTAGAGCCTCTC410.10302542969142627No Hit
CATGTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG410.10302542969142627No Hit
ACACTAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT410.10302542969142627No Hit
CTTGAAGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTT410.10302542969142627No Hit
ACTGCAGGGGCCCGGGAGGAGAGAAGACGGGCGGCGTGCCATGGCG410.10302542969142627No Hit
ATGCTCGGGATGAGGAGGGGGATGCTGAAGAAGCGATGGTGGACAA410.10302542969142627No Hit
GTCTAGGGGGCTCTAGTATCACCTATGTAGGGACCCACATGGTTTT410.10302542969142627No Hit
TGTACAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT410.10302542969142627No Hit
TTGAGAGGGAGAGTCCCCAGATCACCTACACCCTCAAACTTGGTGG410.10302542969142627No Hit
AGGATTGGGGTGAAGGCCAGGGCCGCCTACCAACTCTCAGTTTTTT410.10302542969142627No Hit
GGTACGGGGGCCAGGACGAATGTGGATGTTCTTGACCAAATGCATC410.10302542969142627No Hit
TCATTAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT410.10302542969142627No Hit
CGCTTAGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA410.10302542969142627No Hit
TAGGTCCGGGTGACCATCTCGCCCAACAATAAGCCCAAGCTGAACA400.1005126143330988No Hit
GCTCATGGGGTCCGTGATCTCCGCACAAAATGCCCGGTGAAGCCAC400.1005126143330988No Hit
CATACAGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT400.1005126143330988No Hit
ATCTCCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA400.1005126143330988No Hit
CACTTAGGGAGAAGCTGCTGGCGGAGGACAAGGAGAACTAACTCTA400.1005126143330988No Hit
GCCTCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC400.1005126143330988No Hit
GCTCTTGGGGAAATGAAAGAAAAAGATCTATTGCAGATATCTGATG400.1005126143330988No Hit
TACGCTCGGGGCCCTGTGGACCTTACTGCCAGTGAGTGTACGCTCG400.1005126143330988No Hit
CTCTACGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA400.1005126143330988No Hit
ACCTAGGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA400.1005126143330988No Hit
TTCTTGGGGGAACGGAGCCCTGGTGACAGGATGTTGGTGTTGGTAC400.1005126143330988No Hit
AGTGCTGGGGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCC400.1005126143330988No Hit
GTAAGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC400.1005126143330988No Hit
CGTTAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA400.1005126143330988No Hit
CTAGCTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT400.1005126143330988No Hit
CTCTCAGGGAGATCACCGCGGTTCCTGGGCAGGGCACGGAAGGCTC400.1005126143330988No Hit
TTTACCGGGAGTGCGGGTGGCGCGCATGCGTGCTGGGTACACGTCG400.1005126143330988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)