FastQCFastQC Report
Sat 31 Dec 2022
SRR5843248.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843248.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41402
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACATGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT700.1690739577798174No Hit
CAGTTCGGGGACGACCGAGTTGCCATGGCTCTGCTGAACCGTCTGG680.16424327327182262No Hit
AGTAGCGGGAACACAGTGAGAGGAATAGAGACCTGCGGGATCCTCT630.15216656200183568No Hit
TCAATCGGGGCTGGACCCTTGGGGGAGACCTGGCTGGAGCTTGTCC620.14975121974783828No Hit
ACTACAGGGATCCCACTCACGTTTTCCAATAGGAAGGAGTACGTAG560.13525916622385392No Hit
TTTGCCGGGCATTCATTACCCCAACAATAATAGGATTCCCAATCGT560.13525916622385392No Hit
TACGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC560.13525916622385392No Hit
TAGTTAGGGTCACAGAACAACCGCCGCATACGGCCGATTGTCGCAG560.13525916622385392No Hit
CAAGAAGGGATTGCTTTCCTACTTAAGGTGGTTAGGTTAGGAGATC530.12801313946186174No Hit
TTTTAAGGGAGTTGGTCGAAGACAGAGGTTCAGGTCGTTCCAGGGG530.12801313946186174No Hit
GACTAGAGGGATTTGGGTGTTCACAAAGAAGAGTGCTCGGACATGA530.12801313946186174No Hit
GGTGAGGGGGTGGCCACAAGCTGTTCACATGTGGCCTATTGTGTGG530.12801313946186174No Hit
ACTCTTGGGGTTTTAGGTATGTATATGTGTCACAATGTAAGATGTT520.12559779720786438No Hit
CAACCAGGGACAGCCTTTAATTTTCTTTTCTCAATGCAGACACTTT520.12559779720786438No Hit
CAACAAGGGGCTGATGCAGGTGAGTTCCCATGCAGGGGCTGAGTCT520.12559779720786438No Hit
ATAAATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA520.12559779720786438No Hit
GCATCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC520.12559779720786438No Hit
GATTAGGGGGTCTATGGCAGGACTTAAAGAACTGCTTCGGGACTCT520.12559779720786438No Hit
TTCATAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA510.12318245495386697No Hit
GGCGCAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC510.12318245495386697No Hit
CGTACCTGAGGAGGTCAGAAATGTTTACCCAGTACTAACATATACC510.12318245495386697No Hit
GTTTAAGGGAGTTCTTGGAGATCAAATGCCTTGATCTGACCTCAGG510.12318245495386697No Hit
GTTAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.12318245495386697No Hit
AGTGCGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC500.12076711269986956No Hit
GGTAATGGGCTCCCGTAGCCCTTTCACTTGGGCTTTTGGCTTGCAT500.12076711269986956No Hit
GACACAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG500.12076711269986956No Hit
TCGCTAGGGATGGCCATGGTGGCCGGCAGTTCTGGCTCGTCAGCTC490.11835177044587218No Hit
CAATCAGGGGGGGCTGGTCCAGCAACCCGCAGGATGTCGGAGGTGC490.11835177044587218No Hit
CGTGATGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC490.11835177044587218No Hit
TGCAATGGGCTCGCATAGGGATGACCCACCAAACTCATGCATATCA490.11835177044587218No Hit
ACTTTCGGGACACATTTGCTTCTGACATAGTTGTGTTGACTCACAA490.11835177044587218No Hit
AAATATGGGGTTGCCAACTCCATTCACCTGTTTTGGTCTCGAGTTG490.11835177044587218No Hit
AATCTAGGGACAACAATTGAGAAAGACATCTGATGTAGACCTCTCG490.11835177044587218No Hit
AAGTTGGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG490.11835177044587218No Hit
GCGCCAGGGATGCACAGACCTGGTCAATCTTTGGCTGATTGAAAGA490.11835177044587218No Hit
CTTACTTAGGGATGCCACAACTAGATACATCAACATGATTTATCAC480.11593642819187479No Hit
TCTAAGGGGATCTACACATACTTAACCATGATAGGTGTCCACTCAC480.11593642819187479No Hit
GCAATGGGGGTTCTCAACAGTCATGACCTCTACCAAAAGGTAGCCC480.11593642819187479No Hit
AAGGACGGCAACCCAACAGGATTAAACTCAGATGCAGATAAAATTC480.11593642819187479No Hit
TTGTCCGGGGCAGCTCAGGCAATTTCACGATTTGCTTCTACAAAGA480.11593642819187479No Hit
CATACTGGGGAGGCGCGGGCGGCGGCACAGAGACGAGCGCGGGTGG480.11593642819187479No Hit
TAACAAGGGGTGATTCTGTATGCAGCCGAGTGTGCCACACAGGTAG480.11593642819187479No Hit
ACTCCAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA480.11593642819187479No Hit
GTCAACGGGACAAATTTTGATGTAACTTACAACTGGATTCAAGATA480.11593642819187479No Hit
CTTAAAGGGAACCCAGTAATTATGGTGTAAATTAAGTAGCAATTTA480.11593642819187479No Hit
CTTGATGGGGTTGAGACAGTGTCTCATAGCCCTGGCTGTCCTGGAA470.11352108593787738No Hit
GCTTTAGGGACACTTCTGATTCTGACAGACTCAGGAAGAAACCATG470.11352108593787738No Hit
TCCGACGGGCTGGGCATGAGGTCTATCCTTAAAAGTGGTTTGTGTA470.11352108593787738No Hit
TCTTGCGGGGACTAAGACACTAACAGACACTAAGAGAATTCAGGCC470.11352108593787738No Hit
ACATCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.11352108593787738No Hit
GACTTAGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAACC470.11352108593787738No Hit
TGAAAAGGGACTGTGGAGAGCTGAAAAGGAGGCTGGGCCTCTCCAC470.11352108593787738No Hit
TGCTTGGGGACAGCACAGTGCGCAACTCTGCAGCCACAGCTGAGAA470.11352108593787738No Hit
GCTTGCAGGGGTAGACCATCATCCTATCTCCATTTCTCCCATCTGG460.11110574368388001No Hit
TTCACAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC460.11110574368388001No Hit
CAATGCGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTC460.11110574368388001No Hit
CAACAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA460.11110574368388001No Hit
ATCCGTGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC460.11110574368388001No Hit
CGTGACGGGACCTGCGCTGGGTGCAGACGCTGTCTGACCAGGTCCA460.11110574368388001No Hit
CTAACAACGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGC460.11110574368388001No Hit
TCCAGTGGGGAAGCACCTGAATTTACAGAAGATGCAGAAAGCCTCG460.11110574368388001No Hit
GGTACCGGGTCAAACTTTAGCATTTAAAAAGAAAGATGCAACAGAA460.11110574368388001No Hit
CTTTGTGGGGGGAGACGAAGATGGCGGCGGTGACCGCGGGGCCCGT460.11110574368388001No Hit
GAACATGGGGTCAATGATGGGGTGGCTCAGAGCACCCGGATCATTT460.11110574368388001No Hit
CTGCAAGGGTAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTT450.10869040142988261No Hit
GATGCCCTCGTCTGCTGTGTCCAAAGAGAGCAGCAGTGTACTCACA450.10869040142988261No Hit
CAGACAGGGATCGCCTGGGCCGAAAGATCGGCAGTGGCTCCTTTGG450.10869040142988261No Hit
GTTGCTGGGGTTGCTGCTGGGTGTTGAGACCTGCAGACCCAAGCTG450.10869040142988261No Hit
ACTCACGGGACTCTAACTTGCTCCTTCTCCACTGTCAGGGAACTGG450.10869040142988261No Hit
AGCTCTGGGATTGTTTTCCTAATTAGCTCCTTAGTCCTCTATATCA450.10869040142988261No Hit
CGTTCAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC450.10869040142988261No Hit
CACAGAGGGATACATATTTACAGTTACACTATGCACACCACATACA450.10869040142988261No Hit
CGAATAGGGGTTTTCAATGTATAAAGGCAGTATTTCCCTTTTCAGG450.10869040142988261No Hit
CATCTGGGGGTTTGGCGCTGGCATCAGTCCTCAGATGCAGCAGAAT450.10869040142988261No Hit
TTCTCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC450.10869040142988261No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG450.10869040142988261No Hit
TTGCACGGGGTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA450.10869040142988261No Hit
GCCAACGGGATCTCATTTCTTCTTGTTTCTTCTTCGCCCACGACCA450.10869040142988261No Hit
GGAACGGGGGAATAATTCGCATCTCCATTATTCTAGACCCACTAAC450.10869040142988261No Hit
CCTAAAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT450.10869040142988261No Hit
TTTTAAGGGATCTCTGTGCAAGCGCAGAAAGAACCGAGCGGGACAG450.10869040142988261No Hit
ATGTATGGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAAC450.10869040142988261No Hit
TACCTTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA450.10869040142988261No Hit
GCACTTGGGGAACAAGAACCAGTTGCGAAATGGGCTGAGGCAGAGC440.10627505917588523No Hit
CCACACGGGTTATTCTCCCGTAACAGAAGTCCCACTGTACATTTTC440.10627505917588523No Hit
ACGACAGGGGGATTTCATTTTTTTTTCCAATCTTTCTACTTTTATA440.10627505917588523No Hit
CACTTAGGGATTTCCTAGTGGCTTCAGTAACAAAAGTAAAAAACAG440.10627505917588523No Hit
ATAGTTGGGACTCTGAAAGAAGGAGAGCGTCTGCCATGTCCACCCA440.10627505917588523No Hit
GTTTACGGGCTCCACAGCATTGCAGCATTCGCAGACTGCAGCTCCC440.10627505917588523No Hit
GATTCAGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG440.10627505917588523No Hit
AAATACGGGAGGGTGTATATCTCTCAGACCAGCAATCGTGGTTCCG440.10627505917588523No Hit
ACCGCGACTGGCCGGATGCTCGTGGCATATGGCACAATGACAATAA440.10627505917588523No Hit
TTGGTAGGGACACAACCCCCTCGCCATGAATGGTGTCGCAGCTGCC440.10627505917588523No Hit
CTTACGGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA440.10627505917588523No Hit
TGTAATGGGGACACTTCTGATTCTGACAGACTCAGGAAGAAACCAT440.10627505917588523No Hit
GTAAGCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT440.10627505917588523No Hit
CACTATGGGATTCTGACTTAGCAATGAGATTTTTTTTTCAAGGAAA440.10627505917588523No Hit
GTCTCTGGGGTTTGTATTTCTCTCAGCATTCTCCCAAGTTCCCACA440.10627505917588523No Hit
TGTGTTGGGACACCAAGATATTTTGAATTATTTGTAAGTATTCTAA440.10627505917588523No Hit
TTAATCGGGGCCGGTGCTGAGTATGTCGTGGAGTCTACTGGTGTCT430.10385971692188783No Hit
CCACATGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT430.10385971692188783No Hit
GCAAATGGGACACCCAGACAAGTATATACTCAAGGTATCGCAGGGT430.10385971692188783No Hit
GCTCTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT430.10385971692188783No Hit
AGCACCGGGTCTCATTGAAGACGACACGTACTACCCCATAAGCTAG430.10385971692188783No Hit
ACACAAGGAGCTTGCAGACTGAGCACTGTAATAAAGCCCTGCCCTC430.10385971692188783No Hit
TGCCGAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA430.10385971692188783No Hit
GGCCACGGGGGAAACGCTCGGCTGGTCGGCCTTGCTCTCGATATCG430.10385971692188783No Hit
GATCCGTACTTATTACAGCCGTACTGCTCCTATTATCACTACCAGT430.10385971692188783No Hit
GTTTTAGGGGGTCTTTTCTTAGCCATACACTACACATCAGATACAA430.10385971692188783No Hit
ACAGAGGGGGAGTCCAGCCCCCTAGGAGCTGGCAACCCTGCAGAAT430.10385971692188783No Hit
TATCAAGGGGGAGTTCACCTATGACTACCAAAAGCCCATGTTGAAG430.10385971692188783No Hit
ACACAAGGGATTGTGAGCATGTCTGTGTGGGATTATCTTGATTGTG430.10385971692188783No Hit
CATCTTGGGGGAGAATGCTGTGCAAGGATAAGACAGCCAAGCACTC430.10385971692188783No Hit
CTTCTGGGGTGGGATGTTGGAGGCCAGGATAAGATTCGGCCTCTGT430.10385971692188783No Hit
ACATCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC430.10385971692188783No Hit
TGCGCCGGGAAGCTCCCTGATGCCTATGAACGCCTCATCCTGGATG430.10385971692188783No Hit
TACCATGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC430.10385971692188783No Hit
CTCAACGGGGATGCCACAACTAGATACATCAACATGATTTATCACA430.10385971692188783No Hit
GCGTGAGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA420.10144437466789043No Hit
TCTCATGGGGTTTGCAACCATGGAGCTGCTGATGTTCATTTTAGTA420.10144437466789043No Hit
GCACTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.10144437466789043No Hit
CAAACTGGGAAGATTATGTCGGAAGCTGGCAGTGAGACCCTGGAGG420.10144437466789043No Hit
CGCCACGGGGGCGGAGGAGACACGGGCCAGGCTGGGCAAAGAGGTG420.10144437466789043No Hit
GTAAATGGGCAGATATAGCATTCCCACGAATAAATAATATAAGTTT420.10144437466789043No Hit
ATTACAGGGACGGAGGAGCAGCGTCTGTTCTGCACCAACTCAGAGT420.10144437466789043No Hit
TGGTCCGGGGTTTACAAACAAAGCCTTCACCCTGGAGAAGGGCCTG420.10144437466789043No Hit
CTCTCTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG420.10144437466789043No Hit
GACACTGGGGGTCTTTTGCGCTCCTTAGCCCTCTGTCCACGCACTG420.10144437466789043No Hit
CTTCTCGGGACTCAAATCATGTCTTCTGGGGGAAGGGTCAACCTCT420.10144437466789043No Hit
ATAATAGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTC420.10144437466789043No Hit
CTTCAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAAT420.10144437466789043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)