FastQCFastQC Report
Sat 31 Dec 2022
SRR5843247.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843247.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39489
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACATGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT600.15194104687381296No Hit
ACTCTTGGGGTTTTAGGTATGTATATGTGTCACAATGTAAGATGTT580.14687634531135252No Hit
AGCACCGGGTCTCATTGAAGACGACACGTACTACCCCATAAGCTAG570.1443439945301223No Hit
CCTAGCAGGGATTCCCATTTTAAAAAACCCGTCCCAAACTCTCGTG570.1443439945301223No Hit
GTTTAAGGGAGTTCTTGGAGATCAAATGCCTTGATCTGACCTCAGG550.13927929296766187No Hit
TGCACGGGGGTCTTGATATTTCCTTACCCCAACTTTAGCCATTTTG550.13927929296766187No Hit
ATCATAGGGGATGCACGCCTGGGCTGGCTCCCCTAAAGGGACCATC540.13674694218643166No Hit
AAATACGGGAGGGTGTATATCTCTCAGACCAGCAATCGTGGTTCCG540.13674694218643166No Hit
CAACAAGGGGCTGATGCAGGTGAGTTCCCATGCAGGGGCTGAGTCT520.13168224062397121No Hit
GCATCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC520.13168224062397121No Hit
TAGTTAGGGTCACAGAACAACCGCCGCATACGGCCGATTGTCGCAG520.13168224062397121No Hit
AGTCTTGGGGTACCCTGGGGGCTGGGTGGAGAAGGAGACGTACTAC520.13168224062397121No Hit
TTCATAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA510.12914988984274103No Hit
TTCCACGGGAGGTCAGGCCATCGCTCGACGACTGAAACCATTCGGT510.12914988984274103No Hit
GTGCCCGTCTGCCCCCAACGACAACAACCTTTTGGCGGCTCAGCGT510.12914988984274103No Hit
TCTTGCGGGGACTAAGACACTAACAGACACTAAGAGAATTCAGGCC510.12914988984274103No Hit
ATTACAGGGACGGAGGAGCAGCGTCTGTTCTGCACCAACTCAGAGT510.12914988984274103No Hit
CACTGGGGGTCTTCCATTTGCGCAGGAAAGGGCTTGTGCCCTGCAC510.12914988984274103No Hit
ATGTCAGGGCTCCAGCTGAGGCTGCCGAAGGCAACAGTGATCATGG500.1266175390615108No Hit
TGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCCA500.1266175390615108No Hit
GACTTAGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAACC500.1266175390615108No Hit
CCCATGTTGAAGCTCCAATTGCTGGGTCAATAATTCTAGCAGCTAT500.1266175390615108No Hit
TACAAAGGGCATTCCTGACACCCCGGCAGAAGCCGGAGGGCTCAAG490.12408518828028058No Hit
CAGTTCGGGGACGACCGAGTTGCCATGGCTCTGCTGAACCGTCTGG490.12408518828028058No Hit
ACACAAGGGATTGTGAGCATGTCTGTGTGGGATTATCTTGATTGTG490.12408518828028058No Hit
TCCAGTGGGGAAGCACCTGAATTTACAGAAGATGCAGAAAGCCTCG490.12408518828028058No Hit
ACTACAGGGATCCCACTCACGTTTTCCAATAGGAAGGAGTACGTAG480.12155283749905037No Hit
GCTTTCGGGTGATTTCACTATAATTCAATTACACTATTAACCCTTG480.12155283749905037No Hit
CATCTGGGGGTTTGGCGCTGGCATCAGTCCTCAGATGCAGCAGAAT480.12155283749905037No Hit
CATTATGGGGAGCACATTGGGGGCTTCCCTATACTGTCCCTGTCAC480.12155283749905037No Hit
TCGCTAGGGATGGCCATGGTGGCCGGCAGTTCTGGCTCGTCAGCTC470.11902048671782015No Hit
TTCTCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.11902048671782015No Hit
CTCTCTGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA470.11902048671782015No Hit
ACGACAGGGGGATTTCATTTTTTTTTCCAATCTTTCTACTTTTATA460.11648813593658994No Hit
CAAGTGGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC460.11648813593658994No Hit
GGTGAGGGGGTGGCCACAAGCTGTTCACATGTGGCCTATTGTGTGG460.11648813593658994No Hit
ATTAGGGGGTGGAGACCAAGTCAAAGATAACACACCCTGTCTATAG460.11648813593658994No Hit
ACATCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.11648813593658994No Hit
TCAATCGGGGCTGGACCCTTGGGGGAGACCTGGCTGGAGCTTGTCC460.11648813593658994No Hit
TGCGCCGGGAAGCTCCCTGATGCCTATGAACGCCTCATCCTGGATG460.11648813593658994No Hit
CTTAAAGGGAACCCAGTAATTATGGTGTAAATTAAGTAGCAATTTA460.11648813593658994No Hit
ATCATTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.11648813593658994No Hit
TTGCTTGGGGGTCAGGGCCGCTGGTATTTGCTGTAAAGAGGGGCGT460.11648813593658994No Hit
GCGTGAGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA450.11395578515535972No Hit
GGATCCTGGGCGATGTCTTCATTGGTTCCTACTACACTGTGTTTGA450.11395578515535972No Hit
GACACTCTTGGCAGAATGCCCCTGGGTCCTTTCCTGCAGGCCTCCC450.11395578515535972No Hit
TGCTCAGGGGGGCCGCCCTAGGCACCAGGGTGTGATGGTGGGAATG450.11395578515535972No Hit
ACAACGGGAGACTGGGATGGTATCCGGAAGCACTTGGATGAATATG450.11395578515535972No Hit
GCCGCGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGGT450.11395578515535972No Hit
CGTGACGGGACCTGCGCTGGGTGCAGACGCTGTCTGACCAGGTCCA450.11395578515535972No Hit
CGAATAGGGGTTTTCAATGTATAAAGGCAGTATTTCCCTTTTCAGG450.11395578515535972No Hit
GCATCCGGGGGGACAGAAGGAACATTACGCATGGGTGTATGGGGAA450.11395578515535972No Hit
CACACTGGGATATGGCCTACCCATTCCAACTTGGTCTACAAGACGC450.11395578515535972No Hit
TGCTTGGGGACAGCACAGTGCGCAACTCTGCAGCCACAGCTGAGAA450.11395578515535972No Hit
ACAACAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT440.11142343437412949No Hit
ATATAGGGGCTTACCATGAGTTAGCACAAGTTTATTCAACCAACAA440.11142343437412949No Hit
ACCATAGGGGTGTTGTCTTCATCGTCCACATCCCTAGCATCCCTAG440.11142343437412949No Hit
GCACTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC440.11142343437412949No Hit
CTTTTAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC440.11142343437412949No Hit
ACAGAGGGGGAGTCCAGCCCCCTAGGAGCTGGCAACCCTGCAGAAT440.11142343437412949No Hit
ATGCATGGGATCTATGAGAAGAGGCGGAAGCCAGACCAGACCCTGG440.11142343437412949No Hit
ATTCAAGGGGTTTTTACTAGCCTCCAGTGCCTTGTGCTGGAAGGTG430.10889108359289928No Hit
CAAACTGGGAAGATTATGTCGGAAGCTGGCAGTGAGACCCTGGAGG430.10889108359289928No Hit
CACCTCGGGGGGGCAGGCATTGGCTCTTTGATGTTCAAGGGGATCA430.10889108359289928No Hit
ACTTTCGGGACACATTTGCTTCTGACATAGTTGTGTTGACTCACAA430.10889108359289928No Hit
CAACCAGGGACAGCCTTTAATTTTCTTTTCTCAATGCAGACACTTT430.10889108359289928No Hit
ACATCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC430.10889108359289928No Hit
TACACTGGGAGCTAAAAACGAGCAAGTCAAGGGCAAGATCGACACA430.10889108359289928No Hit
CTAGTAGGGGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGTAT430.10889108359289928No Hit
TCGCTGCGGGGCAAAGGGTTTTTGTGAATTACGGTGGTGGGTAAGA430.10889108359289928No Hit
CTAAGGGACTGAACGTCAGACAGACAATCGGAAGAGGAGGGAGAAT430.10889108359289928No Hit
GACACTGGGGGTCTTTTGCGCTCCTTAGCCCTCTGTCCACGCACTG430.10889108359289928No Hit
AGTTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG430.10889108359289928No Hit
GTCTCTGGGGTTTGTATTTCTCTCAGCATTCTCCCAAGTTCCCACA430.10889108359289928No Hit
CAAGGCGGGGGGAATTCCGCCGGATAAAGGCTTCTTCGGTACTATA430.10889108359289928No Hit
CAGCAGGGATCTGCATGCGGGATTATAGAAGAGCTAATAAATTTCC420.10635873281166906No Hit
TGCTAGGGGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAGG420.10635873281166906No Hit
CACGAGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.10635873281166906No Hit
CGCCAAGGGACAGTTTCTTGGGGATGTGGTGTTTATCCCAGCAGGA420.10635873281166906No Hit
TTGCTCGGGACACATTTGCTTCTGACATAGTTGTGTTGACTCACAA420.10635873281166906No Hit
AAATATGGGGTTGCCAACTCCATTCACCTGTTTTGGTCTCGAGTTG420.10635873281166906No Hit
GCTGCAGGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAAC420.10635873281166906No Hit
CTAAACGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG420.10635873281166906No Hit
CTCTCTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGG420.10635873281166906No Hit
ATGTATGGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAAC420.10635873281166906No Hit
CGTCGCGGGCAGTTGGGTCTGAGGTGCAGGCGCGAGGGGAGCGGGG420.10635873281166906No Hit
AACTATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC410.10382638203043887No Hit
GGCGCAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC410.10382638203043887No Hit
CACAATGGGTCACAATGGTTAGATTATACAGAATGGAGCAAGGCTT410.10382638203043887No Hit
TTGATAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC410.10382638203043887No Hit
CACCTCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA410.10382638203043887No Hit
TGCCGAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA410.10382638203043887No Hit
TCACTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC410.10382638203043887No Hit
CGTACCTGAGGAGGTCAGAAATGTTTACCCAGTACTAACATATACC410.10382638203043887No Hit
AGTAGCGGGAACACAGTGAGAGGAATAGAGACCTGCGGGATCCTCT410.10382638203043887No Hit
CCAGCTGGGAGTCCTGAAACTGAGTCTTGCTGCAATCCAAAAATAA410.10382638203043887No Hit
TTGGTAGGGACACAACCCCCTCGCCATGAATGGTGTCGCAGCTGCC410.10382638203043887No Hit
GTAAATGGGGCATAGGCATTTGCAAATACAGGAGGAAAGGGAGCCA410.10382638203043887No Hit
CAAGCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA410.10382638203043887No Hit
CTCATGGGGGCCCTGAACCGCTTCTGGGATTACCTGCGCTGGGTGC410.10382638203043887No Hit
GGTACCGGGTCAAACTTTAGCATTTAAAAAGAAAGATGCAACAGAA410.10382638203043887No Hit
CGAACAGGGGAACCCACAGGTTGAGAAACACTGGTAAATACAGTGA410.10382638203043887No Hit
GGTGACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA410.10382638203043887No Hit
CGAAGAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC410.10382638203043887No Hit
CACTATGGGATTCTGACTTAGCAATGAGATTTTTTTTTCAAGGAAA410.10382638203043887No Hit
CGCAAGGGGGAAGAAGGCAGTGGTGGTGGACATCACAGAGCACTGC410.10382638203043887No Hit
GCACACGGGGGCATCCACGGAGGCGGTGGGCTCGGGCAGTCATGGA410.10382638203043887No Hit
GGCTAAGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGT410.10382638203043887No Hit
ACTATAGGGGGGTCAGGGACCAGAATGGAGACGCTTGTTAGAGGAG410.10382638203043887No Hit
CTTGATGGGGTTGAGACAGTGTCTCATAGCCCTGGCTGTCCTGGAA400.10129403124920863No Hit
TGATGTGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGA400.10129403124920863No Hit
GTAAATGGGGCCGGCAGCCAGGAGTGTGCAGACATCTTGATCCAGC400.10129403124920863No Hit
TAACAAGGGGTGATTCTGTATGCAGCCGAGTGTGCCACACAGGTAG400.10129403124920863No Hit
TGGTCCGGGGTTTACAAACAAAGCCTTCACCCTGGAGAAGGGCCTG400.10129403124920863No Hit
GCCTCGGGATACATGAAGCATCTTTAATTGATCTGAAAATGGTCTT400.10129403124920863No Hit
CTGCCTGGGATTAAAGATATATTGCTGACATCACATGGGTGCTGTG400.10129403124920863No Hit
ACGCCTGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC400.10129403124920863No Hit
TTTTAAGGGATCTCTGTGCAAGCGCAGAAAGAACCGAGCGGGACAG400.10129403124920863No Hit
ACATAGGGGGTGCAGGAGGCTGTTGGGTATGAGCCACATACAACTT400.10129403124920863No Hit
GTAACTGGGAGTGAGGTGGTAACGCTCAATGTCACAGAGCCCCCAC400.10129403124920863No Hit
ATATCAGGGGTCCTCCCGGTGCTTAGGATGTGGGAATCCCTTGTCA400.10129403124920863No Hit
ACAGCTGGGGGGGGAATTCGATGTTGGAGTTAACGGAGACCCGCCA400.10129403124920863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)