FastQCFastQC Report
Sat 31 Dec 2022
SRR5843246.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843246.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56613
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTCAGGGGGAACAACCAGCGACTGCGTGAGCGGGGCTGTGGATC710.1254128910320951No Hit
TTCAATGGGAGGTGGCACCAACCTTGACTTTCAGATGGAGCAGTAC700.12364651228516418No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG690.12188013353823327No Hit
CAAACTGGGCAGAAAGCATCACAAAAATATTTGAAATTGTACGGTC650.11481461855050959No Hit
TGCAGGGGCGCAGACGCTTGAAACGATGTGACATCGCTTCTAGAGT650.11481461855050959No Hit
GCACGCGGATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTA630.11128186105664777No Hit
ACGTAGGGGGGACCCTGAGAAAGCCAGAGCCGGTTTGCAGGCAACG620.10951548230971685No Hit
GCATAAGGGGACATGGAACGAGGTCTAACTGAATAATGGCTATGTT610.10774910356278593No Hit
TCCCCATTAACTTCCTAGAACACAGACTGGATGGTGGAGAAAAGAA590.10421634606892409No Hit
AATCTAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT580.10244996732199317No Hit
CTATCAGGGATTAAAATAGAACTTTAAAATGAATTCTAAGTGTGTG580.10244996732199317No Hit
CATAATGGGGGAGCTTCTCCTTGCTGAACACTTGGGTCCCAGTGAA580.10244996732199317No Hit
GTCCACAGTACCAAGCCTGTGTAATCCACTCCCTGCATTAAACCCC580.10244996732199317No Hit
CTGCTAGGGGACGCGTCCCGGGTCGCGCCGGCCCAAGATGGCGTGG580.10244996732199317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)