FastQCFastQC Report
Sat 31 Dec 2022
SRR5843236.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843236.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52883
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGTGCGGGGTCACTGGGAGCAAGTACACAGAGTTCAACTCTTCCA780.14749541440538547No Hit
CTCCCCGGGTCCAGTGGATTTTTTTAACTATTATTCAAAAGCAAAA780.14749541440538547No Hit
TCCCTGGGGGACGGACCTAAGATGGCGGCCTCCAGGGGGCTGGGAA720.1361496132972789No Hit
CTTACAGGGACAGTTGTTTGGGAAGCGCGACAGCATGGACGACGAG710.1342586464459278No Hit
GCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTG710.1342586464459278No Hit
CGCTTGGGGGTGGTGATCCCTTCCGCTTTACCCAGGCTGGCTCAGA700.1323676795945767No Hit
AGGACAGGGGCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTG680.12858574589187452No Hit
CACATAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC660.12480381218917232No Hit
ATGAGAGGGGATCTTGCGCCGGGGTTTTTTAAGTCAACTGGTATCA640.12102187848647013No Hit
CACACTGGGTCAGCTGCTGGTTCCCTACGTAGTCAACGTGTCCTGG640.12102187848647013No Hit
CTGGCGGGGGGAGGGATGATGCAGTCCTTATACAAAACCGACAACT620.11723994478376795No Hit
AGTATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTT610.11534897793241686No Hit
CTCCATGGGGAGTGACATCCACAGCAGGATGCCTGCCATACTAGAT600.11345801108106576No Hit
ATCGTGGGGAGCCTCGGGGCTCACAGAACAGAGGGGCTGAGTTCAT600.11345801108106576No Hit
CTTGTTGGGCTGTCCCTGCTGGTCCTGGGGCTGCCAGAATTCCCTT600.11345801108106576No Hit
TGATAAGGGGGCCTTGTCCTGCCCTCTGTACTGGGTATCACCTTTG600.11345801108106576No Hit
CAGCCGGGGGACTGGGGTTGCCTTCTGATGGCGGTCACTTCATGGG600.11345801108106576No Hit
AAAAGTGGGGGCGGTGACATGGCTCCTCCGGTTCCTGGCGCGGTCT590.11156704422971467No Hit
AGCCGCGGGATACTATATACATTGGATCAAGTCTATATAGTAGCTA590.11156704422971467No Hit
ACGTATGGGAGCACAAGAGTCACCTGTACCTACTGGTCACTGACCA580.10967607737836355No Hit
TACGCAGGGGCTCTTTGGTAACGGAAACAGTAGAGTAGGAGACTTT580.10967607737836355No Hit
CGCAATGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA580.10967607737836355No Hit
CTCTAAGGGGCCACTGTGCCTGCAACCTTGTCTGAGAGGAACCCTT580.10967607737836355No Hit
AAACATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT570.10778511052701245No Hit
ATCATAGGGGACCAAGGAGAAAGTAGTTTTGAGATGTGATGCCAGT570.10778511052701245No Hit
AGTCAAGGGGGGCCGCCCGGGACGGACGTGGAAGATGGCGGACGCG570.10778511052701245No Hit
GCTGTCTGAGAATTCCTAGCAAAGATCCTCTAGAAGAAACCCCAGA570.10778511052701245No Hit
TCCACCGGGATCATAGAAAATTGTATTATGCATGCCGTTGCATTCG560.10589414367566136No Hit
GGCGCTGTGTCTCCTCACTATTGTCGCCCTGATTCTGCCCAGCAGA560.10589414367566136No Hit
TTGGCTGGGAGAGCGCGGGACGTCTGTCTTCGAGTCCGAACGTTCG560.10589414367566136No Hit
AAGCCTGGGTCCACATGCAGTCCTTTGCTCAGGAAGTCTTTGGGGA560.10589414367566136No Hit
GTGTTAGGGGAACCTCACATGCACTGACTGGACTACACAAAGCAGA560.10589414367566136No Hit
AACTTAGGGGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGTAT550.10400317682431026No Hit
CTCGCAGGGGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGCAG550.10400317682431026No Hit
CAACCATAGTGGCCTCGTGACCTTCCAAGCCTTCATTGACTTCATG550.10400317682431026No Hit
CTATGCAGGGGGCGGCGGCGGCAGCGTAGTTCCTAGCCGTGCAGCT550.10400317682431026No Hit
ATTATTGGGGACTAGCGGCGGCATTTTGCAGGCAGCATTTCCGTTA550.10400317682431026No Hit
CACTTTGGGTGAGCACAAGAAGCAGTAAGTTGGCACCTTGCCACAC550.10400317682431026No Hit
TTTCTAGGGACAGAAAGTGTTGTGACAAGGGGACTTGGGCACCTTG550.10400317682431026No Hit
TCAGCTGGGGGCCTACGTGGAGGGAGAGTGCCTGGAGCTGCTCCAC550.10400317682431026No Hit
TATGCTTGGGATGAACAGATCTGGCCAACACAAGAACCTGTGTCTT540.10211220997295917No Hit
ACTCGCGGGGCCGGAAGTGCCTCTCCGCCCCTGCTACTGGACCATG540.10211220997295917No Hit
TCTTGGGGGTAGGCAAGCTTACTATCATGGAGCTGTGTCCCCGGCC540.10211220997295917No Hit
TTGCTAGGGGGGAGAAGATTGAAAAGGAGCTGGAGACAGTTTGCAA540.10211220997295917No Hit
GATAAGGGATTCCCAGGGCTCCTAAAGACACCTGGGAGAGGAGAGG540.10211220997295917No Hit
TATACCAGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCT540.10211220997295917No Hit
TCGTACGGGGGACAACAACTCCCACAAGAAGAACATCTTCGAGAAA540.10211220997295917No Hit
AACATAGGGGAGGAAGCGTCCGGAAAAACCCCACAGAAGCCAGGAC530.10022124312160807No Hit
TGTCAGGGGGGTCGCTCTCCGCTCTGGATTTCGCCGTGATGTCGAC530.10022124312160807No Hit
AGACGTGGGGTAAATCAGAGGTGCTTGTTTGCTTAAGACTGAGTAA530.10022124312160807No Hit
TTCGGTGGGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGGC530.10022124312160807No Hit
ATACGGGGGGCGCGCCATCTTGGCTACTCCGTGAGGGTCGAGCGTC530.10022124312160807No Hit
TAGTTAGGGAAGCCAGGACTCAGTGTTTGTATCTCTATGCTGGACT530.10022124312160807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)