FastQCFastQC Report
Sat 31 Dec 2022
SRR5843234.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843234.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50810
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAATCCGGGGATGGGCTTGGACTGTGGTCCTGAAAGCAGCAAGAAG880.1731942530997835No Hit
AGATGCGGGACATATCTGCTTCCGACACAGCTGCAATCACTAGCAA820.16138555402479826No Hit
CATACCGGGCTCTTTTCCGTGGCGCCTCGGAGGCGTTCAGCTGCTT790.15548120448730565No Hit
CCTTCAGGGGGATATTCTGACTTACGTCACCTGGAAACTGAGCGGG740.14564062192481794No Hit
TAGTGGGGGCTTTTCCGTGCTACCTGCAGAGGGGTCCATACGGCGT720.14170438889982287No Hit
ATGGCAGGGGGGAGGGCGGCAGCGGCGACCGGAGCGGTAGGAGCAG630.12399134028734501No Hit
CTTAGTGGGGAGGGGAAGAAGATGGTGTTCGGAAGCAAGCCTGGGG630.12399134028734501No Hit
TGCTAAGGGAGAAGGGCTTTGTGGAGGGTCTTGGACATCTCCCTCC620.12202322377484746No Hit
TGAACGGGGGAATGGGGACACACTGCATTCCACCTTCACTCTGGGT610.12005510726234993No Hit
ATAGCAGGGGTTTTTAATTGACCAAAATATTCCATTCTATTCTCAC610.12005510726234993No Hit
TTGTATGGGGAACGACTGGAGCGCACGAGACATCCAGCAATGGGAG600.1180869907498524No Hit
GAATCTGGGGCATCCTCGTCGCAGAGCAGGAGGCCAAGGAATAGCA600.1180869907498524No Hit
CCTTAAGGGAGGGTTCTTTGATGACATTCTCATCCCCCCTGAGTCA590.11611887423735485No Hit
AGTGCAGGGGCGGAGAAGCTGGAGCGGCAGCTGGCCCTGCCCGCCA580.1141507577248573No Hit
TCAGTTGGGACGATGCTTAAATGATACATTATTCCCCGGGGTGTGA580.1141507577248573No Hit
TTCATTGGGACCATTTTATATGGGTTTTGCATCATCCCTGAGAATA580.1141507577248573No Hit
AAATAAGGGAGAGATGACACGCTATCAGAAAAAGCATGATATTAAA570.11218264121235977No Hit
ATCTGTGGGCCGCCGCATACGGCCGATTGTCGCAGCCCGGGTCGAT570.11218264121235977No Hit
GCCGAGGGGCTCTTCCTGCTCTCCATCATGGCGCAGGATCAAGGTG570.11218264121235977No Hit
CACTTAGGGGCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTG570.11218264121235977No Hit
CTAATCTTGGGATGACGACGTGGTGACCGGGAAGTCCAGAGTCGGC570.11218264121235977No Hit
CTCCATGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC570.11218264121235977No Hit
CTCGCAGGGGAGCAAATGGCTGCTCTTCGCATGCTGTGGATGGGTT570.11218264121235977No Hit
CATGCCGGGAGAGCCTGAAGGACACTATTGCCAGAGCACTGCCCTT560.11021452469986225No Hit
AACTATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC560.11021452469986225No Hit
AATTGTGGGAGGCCTGGTCAGGAGTGGTGGGGGGGCCCACAGACTG560.11021452469986225No Hit
CAAACTGGGGATGAAAATTATGATGTTCATTTTAGAATAAAATCTC560.11021452469986225No Hit
GCGAAAGGGGGGTGCCAAGCTGCTCGTGTCAAACCTGGACTTCGGG560.11021452469986225No Hit
CAAAATGGGACGTCATGTACTATGAGATGTCCTACGGATTGAACAT550.1082464081873647No Hit
ATATGTGGGGATACATATTAATTGTATGAGGTTGGCTTTTCTCTTT540.10627829167486715No Hit
TGCCGCGGGAAACACACCTGATGGTAAAGAACACATTGAAAGTACT540.10627829167486715No Hit
GTCAGCGGGGGAGGTCTGCCCAGAAACCAACCAGGTCCTGATCAAC540.10627829167486715No Hit
TGCTGGGGGAATCCAGAGCTTGCCTGCACACTGGCTAAAACGGCTT540.10627829167486715No Hit
ATTTCTGGGATGAAAGGTTGGTTCTGTATTATTTATCAGCGGAAGA540.10627829167486715No Hit
CACCTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC540.10627829167486715No Hit
GTACACGGGTGGCCACACCCTCCGCCTGGACGCAGCAGCCACCGCC540.10627829167486715No Hit
TAGCAGGGGTAGGTTTTGTTATTTGTTTTAAGATTTAAAAGCTGGT540.10627829167486715No Hit
GCATTAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT540.10627829167486715No Hit
TAACGCGGGATTCTTCCTTGCCACAATCACTATATCTAGTGCTAAA540.10627829167486715No Hit
TCTTATGGGATCAACTGTGGTTCTGGCAAACAAAGTCTCATCTCTC540.10627829167486715No Hit
AGACCAGGGGAGGCACAGACACCAAGGACAGAGACGCTGGCTAGGC540.10627829167486715No Hit
TTGCCAGGGATTTAAATGTGGATCCACGCTATCTCGTTCAGGATAC530.10431017516236961No Hit
GGTTATGGGGTCCTCCCGGCCGGCGGAGCGAGTGGAGGCTGCAGCC530.10431017516236961No Hit
TACATTGGGATGCACATGAACTTCCAAAATATGGTGTGAAAGTTGG530.10431017516236961No Hit
TAGCTCGGGGGCGGATGCGCGGGAGAACAGGCCAGATGCCCGCTCA530.10431017516236961No Hit
ATCGTAGGGGATCTCTATCAGGGGCCCTCGACCGGGGGCGGCGGGA530.10431017516236961No Hit
ACATTAGGGAATGTTGATATAGATTTTTCTGGACCGACCATCTATG530.10431017516236961No Hit
GTCTCAGGGTAGCAGCCAGCTGGTGGGTGGAGAGGCCAGAGGAGGG530.10431017516236961No Hit
AATATTGGGGGTGTGGACAAGGTGCTGTGCTATGCCCTCAATGAAT530.10431017516236961No Hit
GCACCGGGGATGAGCAAAAGGTGAATGCATCCGCCCCGAGGGGGTT520.10234205864987209No Hit
GGTGAGGGGGGATGAGGCCCACAGACAGGTTGTCATCAGCTTGTCC520.10234205864987209No Hit
ACTCAAGGGCTGGTACATGAGCTGTTGATAAAAATTTGAAAAAATA520.10234205864987209No Hit
CCACATGGGATTGTCCAGATGAAGGACGATCATGACAAGATGTTTA510.10037394213737454No Hit
TTAGTGGGAAGGATTACCCTATTAGCTAGGTTTGTATTCATTCATC510.10037394213737454No Hit
TATAGTGGGGTGCAGCAACCGGATGGATTGGCTGTTTTGGGTATTT510.10037394213737454No Hit
AGCAGAGGGGGTCTGTGTGTTGTCAGTACCTGGAATGCAGTGAGCT510.10037394213737454No Hit
CCTAAAGGGGTCAGTCGCGAGCGAACGACCAAGAGGGTGTTCGACT510.10037394213737454No Hit
ATCTTTGGGATGCTACTACATTTGTAGCAATTGGAACTTTGGCTAA510.10037394213737454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)