FastQCFastQC Report
Sat 31 Dec 2022
SRR5843233.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843233.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48460
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATGCGGGACATATCTGCTTCCGACACAGCTGCAATCACTAGCAA970.2001650846058605No Hit
CATACCGGGCTCTTTTCCGTGGCGCCTCGGAGGCGTTCAGCTGCTT780.1609574907139909No Hit
CTCAAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC660.1361947998349154No Hit
TTGCCAGGGATTTAAATGTGGATCCACGCTATCTCGTTCAGGATAC650.1341312422616591No Hit
TCAGTTGGGACGATGCTTAAATGATACATTATTCCCCGGGGTGTGA650.1341312422616591No Hit
AGTGCAGGGGCGGAGAAGCTGGAGCGGCAGCTGGCCCTGCCCGCCA610.1258770119686339No Hit
GTCAGCGGGGGAGGTCTGCCCAGAAACCAACCAGGTCCTGATCAAC600.12381345439537762No Hit
TAGTGGGGGCTTTTCCGTGCTACCTGCAGAGGGGTCCATACGGCGT600.12381345439537762No Hit
TAATCCGGGGATGGGCTTGGACTGTGGTCCTGAAAGCAGCAAGAAG590.12174989682212133No Hit
TCCTCAGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC590.12174989682212133No Hit
GGTGAGGGGGGATGAGGCCCACAGACAGGTTGTCATCAGCTTGTCC580.11968633924886504No Hit
ATTTCTGGGATGAAAGGTTGGTTCTGTATTATTTATCAGCGGAAGA580.11968633924886504No Hit
CTTAGTGGGGAGGGGAAGAAGATGGTGTTCGGAAGCAAGCCTGGGG580.11968633924886504No Hit
GTCTCAGGGTAGCAGCCAGCTGGTGGGTGGAGAGGCCAGAGGAGGG580.11968633924886504No Hit
AGCTATGGGGATGGATGGCTGGTATCTGGGGGGCAGTCAGGGTTGG570.11762278167560875No Hit
ACTATAGGGGCTTCGAGGGGAGAACCTGGTCTCCATGACAGTAGAA560.11555922410235245No Hit
CAGAAGGGGGGATTCCCATCTTAGGGAACAGATACCAGGAGGGTGA560.11555922410235245No Hit
ATACCAGGGGATCGCAGTTCGGCGCGCGCAAGTCGCCGGGAGCTGT560.11555922410235245No Hit
AAGCTCGGGGAGGAGACTGCCAGCGAGTCCCTAGATCTTGTAGCCA560.11555922410235245No Hit
CAACACAGGGAGGGAATGCGAAAGCGGCCGGTCCCGGGGAGCAGAA560.11555922410235245No Hit
CACTACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA550.11349566652909615No Hit
ATTGCTGGGGGAGCAGATCCGGAGCCAGGTGGTGCGCAGCCGGACA550.11349566652909615No Hit
CTAATCTTGGGATGACGACGTGGTGACCGGGAAGTCCAGAGTCGGC550.11349566652909615No Hit
ATAGCAGGGGTTTTTAATTGACCAAAATATTCCATTCTATTCTCAC550.11349566652909615No Hit
GGGGACGGGGTTTGGACTGGAGAAGGGAGGCGGCGGGCAAAGCGCA550.11349566652909615No Hit
AAGTTTGGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTA550.11349566652909615No Hit
ATCTTTGGGATGCTACTACATTTGTAGCAATTGGAACTTTGGCTAA550.11349566652909615No Hit
ACGCAGGGGTGTGGAACTAGTTTCCCAGCTGCAGAAGTCACCTACT540.11143210895583985No Hit
CTATTTGGGCGGAGGGGGGGGGCATCATCTGTCCTTATAGCTCATT540.11143210895583985No Hit
GCCGAGGGGCTCTTCCTGCTCTCCATCATGGCGCAGGATCAAGGTG540.11143210895583985No Hit
AGCCACGGGCTTCCTCCTCTTAACCAATTGAGGTTTCTCCTTGTCA540.11143210895583985No Hit
AACACTGGGATACAGGTCCATCTAGATAGAGCCTTCAGAGGTAGCC540.11143210895583985No Hit
CTGTAAGGGAGAGTTCCTGGTGGAAACCTTCCATGACTGGATCACT530.10936855138258357No Hit
AAATGCGGGAGACTTCAAGGTCAAAACCATCTACCGCAACGACAAG530.10936855138258357No Hit
CATGCTGGGGTTCCAGGCTCACTTGCAAATTTATCGTAAGACCAAA530.10936855138258357No Hit
TGCTGAGGGGGAGGAAGAAACGTCCCTCAAGGAACCAAGAAGAGTT530.10936855138258357No Hit
GTCAGTGGGGCACTGTCCTGTGTGTGATGACCTGACTCAGCATGGT520.10730499380932727No Hit
TGACTCGGGGATGTTCGGGCGCTGCGTTCGGACCCGCTGATCCCCG520.10730499380932727No Hit
CATTGTGGGACTGTGAAGTGCTTGCGAGATGTTGTCCCAGCTGTAT520.10730499380932727No Hit
ATTTCAGGGGGAAATAGACTTCTCCATGCTGCCTGCATCCAATTAT510.10524143623607098No Hit
AAATAAGGGAGAGATGACACGCTATCAGAAAAAGCATGATATTAAA510.10524143623607098No Hit
AACCGTGGGGCTTTTCCGGCTGGAACCATGGAGGCTGTTCCAGAGA510.10524143623607098No Hit
CACCTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.10524143623607098No Hit
CCTCCTGGGACCAGGAAATACAATAGGCATAATCATACAATGTTTT510.10524143623607098No Hit
ATGTCAGGGACATCAGAGAAATGGTTCTGTGGTTAAGGACATGGGC500.10317787866281469No Hit
TGCCGCGGGAAACACACCTGATGGTAAAGAACACATTGAAAGTACT500.10317787866281469No Hit
GTGATCGGGGGTGCGCTTTTGAGAGTCGCGGCGGAAGGAGCCCGGC500.10317787866281469No Hit
TTTTTTATGGGCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGG500.10317787866281469No Hit
CTTGACGGGGTCAGTGTTGACTACAGAGTAACTGAATAATCATATA500.10317787866281469No Hit
CGTCACGGGGCATGGAACTGCGACGCGAGCTTTCCCGCTCATCCCC500.10317787866281469No Hit
AATTGTGGGAGGCCTGGTCAGGAGTGGTGGGGGGGCCCACAGACTG500.10317787866281469No Hit
AACTATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC490.1011143210895584No Hit
GTACACGGGTGGCCACACCCTCCGCCTGGACGCAGCAGCCACCGCC490.1011143210895584No Hit
CCTTCAGGGGGATATTCTGACTTACGTCACCTGGAAACTGAGCGGG490.1011143210895584No Hit
CTTGCACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAA490.1011143210895584No Hit
CAAGCTCAGGTCCCCCTGCCTGTGCAGCAAGCCTTCTATCTTCCCA490.1011143210895584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)