FastQCFastQC Report
Sat 31 Dec 2022
SRR5843232.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843232.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52400
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCAGGGGTGGACAGGTGAAGAGACAAAGAACTCCTTTGACTCC930.17748091603053434No Hit
CTTAGCGGGGATCTTCTGAAGGGGTACACGTATACACACACACACA900.1717557251908397No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG830.15839694656488548No Hit
AACTAGGGGATTCGTTTGAAGATAACTACTCCTATGAACTCTCGAG810.15458015267175573No Hit
TCAGCACGGGATCCACTTCCCTCTGGCCACTTATGCCCCTGTCATC690.1316793893129771No Hit
GTCCATGGGGCAGAATTCTCATGGTGGCTCACTTGAGGGGACCTTG690.1316793893129771No Hit
GCCTAGGGGGTTTTCTTTAGGATATAAAGAGAGCCTTAGAGTGCGT690.1316793893129771No Hit
CAGTAAGGGACCATCCCTCTAATTATTTTTTGGATTGCAATTTTAT670.12786259541984732No Hit
CACGTTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA660.12595419847328246No Hit
AGTAAAGGGACTGAAAGGAAAGACTTAATAGAAGAGTTCAGTGTAC660.12595419847328246No Hit
GCTCAAGGGGAACACGCAAAATACACGCAGCATTGCCCCTTCGATG660.12595419847328246No Hit
AGAAGCGGGACCTTCTCCCAGCGCAGCCACAGCATCTTTGATTGTC650.12404580152671756No Hit
TATCTCGGGGGTGCACCAAAGCTTCTTTTCGTACCAGGACCTGTTG640.12213740458015268No Hit
CTACATGGGGGAACCTTGACTGGGGTGATAATGGCTTCTTTAAAAT630.12022900763358779No Hit
AGCACTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA630.12022900763358779No Hit
GCCAAAGGGTCTTTGTCTCGGGCCTGAGTTCGTAGGCGCAGCCGGC630.12022900763358779No Hit
GTAATGGGGGGAGTCAATGAGATGTGGTACCTCTGTATAGGGTGCT620.1183206106870229No Hit
AATTAAGGGGCGAGGGGGAGCTGCCTCCTCCTAAAAGTTCACTCTA610.11641221374045801No Hit
TAATTTGGGGCTGAGTCTATGGGGGATCTGGAGCAGGTGCAGAGCC610.11641221374045801No Hit
GGACAAGGGGAAAGTTGAGGAAAGCAGTCAAGGGCAGGCTGGGATC600.11450381679389314No Hit
CCACTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT600.11450381679389314No Hit
AGAACAGGGAACGTCATAGAAGCTCACCAAAAGCACCCGGCGTCAG590.11259541984732825No Hit
TCCAACGGGGCTCTGGTGTTTTAATGGTCTGTTTAAAAGATGGAAA590.11259541984732825No Hit
ATTACCGGGGTTCAGAATCAGTTCTTAGGGATGAATTTCATCTTCA590.11259541984732825No Hit
GTAAAAGGGACCAAGGCAGGCAGGAAGAAGAAAAAGAAGAAGGGCT590.11259541984732825No Hit
AAACATGGGTACATCAGCCACTATAATTATCGCAATTCCTACCGGT590.11259541984732825No Hit
TGTAACGGGGAACAATTTTTTTTCCAGTTTGTTTGAAAGGGACTGC580.11068702290076336No Hit
TAAATGGGGACCCAAACGTTTGTTGAATAGATTCCACACAACTAAA580.11068702290076336No Hit
GAACAAGGGGATCTCAACACGGGACACCAATAACCAGGCAGACATC580.11068702290076336No Hit
GCACGAGGGGAAAATAAGTTAAACTTGACTGTTGAAGAGCTAGACT580.11068702290076336No Hit
TTAAATGGGAGGTGCTGACAACATTGATGTTTCCCACCCCATCATT580.11068702290076336No Hit
TCTTGGGGAAATTGGCCGCGGGTGAGGAATTCAGGGCTTCCCGTGT570.10877862595419847No Hit
TCTCGCGGGATTGTGCATCAGGCTGGCATGTTGAAGCGAAATTGTT570.10877862595419847No Hit
ACCTTGGGGGGAACATGGTGCCATTCCCACGCCTGCACTTCTTCAT570.10877862595419847No Hit
CAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCCA560.1068702290076336No Hit
GCATTAGGGATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAA560.1068702290076336No Hit
CTACTAGGGACATAAAACTGAACTGTTATGATCTGAGATTTTTCCA560.1068702290076336No Hit
TACTACGGGACATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTT560.1068702290076336No Hit
GTATCTGGGGTTTTAATTTTTCCATCTGGCTGCTCAGTTCCCACTA560.1068702290076336No Hit
ATGAGTGGGATATCTATCAGGTAATATAGGCTTGAAAATTGATATC550.10496183206106871No Hit
TAGCTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT550.10496183206106871No Hit
ATTCTAGGGGACGAAAATATGAAGCACATCTCCTGTCCTCTGCTCA550.10496183206106871No Hit
CCGACGGGGTGAAATGGAGAGTAGAGAATTCATGGGGTGAAGACCA550.10496183206106871No Hit
TTGCCCGGGGGTCCTCATCTTCTGTATGGCCTCCATGGGAGTTCGA550.10496183206106871No Hit
CTCACAGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA550.10496183206106871No Hit
TTTCCCGGGGAGTTCCTGGCGGCGGGGATCGGGGTAGCCAACGGCT550.10496183206106871No Hit
GCCTCCTCCTCTTCTTCCTCTTCCTCCTCCTCCCACCTCCCACTTG540.10305343511450382No Hit
GCTCGGGGAAGACTGGCAGGACAGTTTCTTGAAGAGCTAAGAAACC540.10305343511450382No Hit
CCGCACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC540.10305343511450382No Hit
GGCAATGGGGTAAGGGGAGTATCACACACAGTCACGACTACTTCCC540.10305343511450382No Hit
TCATTAGGGATCCAGTGAGAAGGTAGTCCCTGCCAGCAAAGACCCT540.10305343511450382No Hit
CGTACAGGGACCAAGGGATAGAACAGACAACCAAGAGACACACTTG530.10114503816793893No Hit
TTCTGTGGGAGGCTTGCCAGTGGCGGATTACTTCAAGCAGTGGATT530.10114503816793893No Hit
TCTGTTGGGGGGATGGATCCCCAGGAGGGGCAGTCTCTGGATGGTC530.10114503816793893No Hit
AATGAGGGGATGAGGGAATTCTGAGCTGAGATTGTCCTTGTCACCA530.10114503816793893No Hit
CTAACCGGAATTGCTGTGTCTGCTCTAGCTCACTGGTGGTAATGAG530.10114503816793893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)