FastQCFastQC Report
Sat 31 Dec 2022
SRR5843230.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843230.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45045
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGAGTGGGGCTCATGGAAGGAGATGAGTGCTGAGGAGTAGAAAGA720.15984015984015984No Hit
CTCAGCGGGCAGCTTAGACCTTTCCAAATAGATCTATTTTCTTAGC670.14874014874014874No Hit
AGATATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC660.14652014652014653No Hit
CTCCAAGGGGGGACCCAATTCTCTACCAGCATCTGTTCTGATTCTT660.14652014652014653No Hit
AGCGCAGGGAGCCCGGGTCGATTATAACAACGGTGCAATCTCAGCT660.14652014652014653No Hit
ATATATGGGTGGACGGGAAGGAGGCCATGTCTCTATTCACAAGGAA650.1443001443001443No Hit
CTTATAGGGGCGAGACCCCACTAACATCAAATGGGGTGAGGCCGGT640.14208014208014208No Hit
CTAAACCGGGGGAACCTAAAAAACAAGAATGAGCGTGACAAGTTCT640.14208014208014208No Hit
GTCAGCGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC630.13986013986013987No Hit
TAACATGGGAGGGCAGAGCTCCATATAACCTTGAACAGCCACACAG620.13764013764013763No Hit
CAACGTGGGGAGATAATGCTGTTGAGATGAATTCATGATCAGTTGT620.13764013764013763No Hit
CGTCTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC600.1332001332001332No Hit
AGTTATGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT600.1332001332001332No Hit
GTACTGGGGACATCATAAACCTGAAGAGGACCTGGGAGAAGCTGTT600.1332001332001332No Hit
TTGCATGGGGGGCCATTGGGACTGGCAAGACGGCAACCCCTCAGCA600.1332001332001332No Hit
GACCATGGGTCTCTGAGCGGGTTCCTGGAGCCACACACGGCTGGCT590.13098013098013098No Hit
GCATTAGGGGGGTCTAGGGAATGAGGTTTAGATTCTGGATAGAAGA580.12876012876012877No Hit
CTTTATGGGGGAGACCAGGGCTTGACGATGGCGGAGAAGACGCAAA580.12876012876012877No Hit
ACTGCTGAGAACTTGACCTTTTCTTACCCCAGCCCCCCAACTCCTA580.12876012876012877No Hit
GCTATTGGGGGGCTCCTCCCATTTGCAGAGGCAGAAGCCTTCCTCA580.12876012876012877No Hit
CGCCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC580.12876012876012877No Hit
TGCACTGGACACCAAGCTAACCCGTATTCCCAGTGCCAAGAAGTAC570.12654012654012653No Hit
ATTACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG570.12654012654012653No Hit
CCAAAAGGGACCTGCTACGCTTGGATAACAAGTAACTCAACGCACG570.12654012654012653No Hit
TTGCGAGGGCACCCACCCAAAGAAGTAAATACAAATTTGAAAAATC570.12654012654012653No Hit
ACACCAGGGCGGGGGTGAGCTGTTTTTCCACCTCTCTCGGGAGCGA570.12654012654012653No Hit
CCACTAGGGCGAGCCGGTGACCTTAGAGACACCAGCATTCATGTTC570.12654012654012653No Hit
TCAAGCGGGAGAACCCAGCCAGCCAGCGGAGTGCAAGCAGCAGTGA570.12654012654012653No Hit
GTGCCAGGGAGCGGAGAACAGCAGCTACATGCATGTCTACCGAGAA570.12654012654012653No Hit
GCCTTTGGGTCTGAGCGTGATGAACGTGCCGAACTTTGACTTCCCA570.12654012654012653No Hit
GCCAGGTTACACATTCCCTGTGTCAGTGGGGAACCCCACTTCTTGG560.12432012432012432No Hit
AGCCAAGGACCACCCAGCCTTCGCCCCCTTATATTTCCCCACGGAG560.12432012432012432No Hit
TATTCTGGGCTCTCGCCAGGCGTCCTCGTTGGAGTGACATCGTCTT560.12432012432012432No Hit
GTCCATGGGGATGTCTTTGGAGAAGCTGATCAGTGATTGCTGACTC560.12432012432012432No Hit
CAGACTGGGGATCCGCGTGTGGGGAATGGAGCGGAGAGCCACCCGA550.1221001221001221No Hit
TAATGTGGGGAGCGAGCCTTCCGGCTGTAACCGCTGGAGGCTTCTG550.1221001221001221No Hit
CCCTGAGAGACCCAAACAAAGTCTTTCCTGAGCACATCGGGGAAGA550.1221001221001221No Hit
AAAGGAGGGGACTGGACTCTTCCCTGGGAACTATGTTGAATCAATC550.1221001221001221No Hit
AATGCAGGGAGTACGGATTCCACGTTTGAGTCCCAACATCTCCAGT550.1221001221001221No Hit
GCCCCCGACACCCTCATCTTGACAATTCTATAATATGAAACAGTTA540.11988011988011987No Hit
AGTCACGGGCGGGTCGTTAAGCGCCGTTGCAGCCATGGCTACTGCT540.11988011988011987No Hit
TATCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC540.11988011988011987No Hit
TTTTCGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC540.11988011988011987No Hit
GACGCTGGGGGGATTTGACAGAGTTTATCTTGAATTTACCAGTTCA540.11988011988011987No Hit
GTAAATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT540.11988011988011987No Hit
AAGTCAGGGATCCCTTTCAAACGCCTGTCTGTGGTCTTTGGTGAAC540.11988011988011987No Hit
ATTTATGGGGGGTCATTGGGCCTGCAGCAGCATCTGCCCAGATGCA540.11988011988011987No Hit
CTATGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.11766011766011766No Hit
CTCACTGGGGACACACACTGCAGGACCGCTAGACGGACGACAACTT530.11766011766011766No Hit
TCAGTCCGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGC530.11766011766011766No Hit
TTCCTTGGGATCAAAAAGAAGCTCAAAATTATCCCTGAGGATATCT530.11766011766011766No Hit
ATATAAGGGCATCAGGATATGGTGGCACCAGAAGACGGTAAAATAG530.11766011766011766No Hit
GGTTCTGGGGATGCATCAGTGGAATGTTCGTGTTCCTCACCTATGT530.11766011766011766No Hit
CTGCCGGTGCTTCCCCATCTGACATGGGAAGGAAGTACTGAATTTG530.11766011766011766No Hit
TTTGGTGGGTCCTGATATGAAGAAGAGAGTGGAAAATGCCTACATC520.11544011544011544No Hit
TAGACTGGGGGGGCACTGAGCGAGCGGCTGCTACGGTCCACGCTTC520.11544011544011544No Hit
TACTTAGGGAAGTTGTGTTAGATGCATCTCCGTTCTGCAGTTAGTT520.11544011544011544No Hit
TTCTGTGGGGGGCTAGGGCAAAGCTTAGTGCTCAGAAAGAGGCACT520.11544011544011544No Hit
GCCCAGGGGACAGCGCCCTCGCCACCGCGTCTCTGCTGCTTTTGTG520.11544011544011544No Hit
TGCACAGGGGACAAGAACACTTGAACACACAGAACGGAGACTATGC520.11544011544011544No Hit
TCACCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT520.11544011544011544No Hit
GCATAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG520.11544011544011544No Hit
TTCCATGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC520.11544011544011544No Hit
AGCCATGGGGGAGTCAAATACATTCTCTTTGATGCACAAAACCAAG520.11544011544011544No Hit
CATAGCGGAGACAATAGTAAGAACAATTAATAGTGACAAAGAGAGT510.11322011322011322No Hit
GAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAA510.11322011322011322No Hit
GGCTCTGGGGTAGTAACCTGGGTCCGGGGCCTCGGTGGTGCTCCTG510.11322011322011322No Hit
ATAAGTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.11322011322011322No Hit
TCAACTTGGGGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAG510.11322011322011322No Hit
GCTTGTGGGGAGGTTTATAGATCTCACAGAGCTGTTTCAAAGATGA510.11322011322011322No Hit
TCTTTTGGGCAAGTCAAAATGACTCTGAGATTCCATCTTACACCTG510.11322011322011322No Hit
GGACTCGGGGCAACGAGTGTGGGAAGGGCTTCGGGAGGCGTTCGCA510.11322011322011322No Hit
TGCCAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA500.11100011100011101No Hit
GTTAACGGGTCACACAAGAACTGACGGCACTGATGGAGGACACTAT500.11100011100011101No Hit
ATGGCTGGGACCTAAAAGTAATTATATAGGTAAAGAGAATATTCTT500.11100011100011101No Hit
CATGTAGGGATCCTCCCAGGATTTGGAATTATTTCACATGTAGTTA500.11100011100011101No Hit
ATCCAAGGGGGCACAAAGCTTGTTCCGTTAGCTGGCATAAGATTCC500.11100011100011101No Hit
TACCTTGGGGGTCCTTAGCGGGCCCAGCGGATCCGGACGTGGAGCG500.11100011100011101No Hit
TAACAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTC500.11100011100011101No Hit
CGTTGCGGGGGGCCTGGAGACTGCGGGCGGCGTGATGACGGCGCTC500.11100011100011101No Hit
ACAGTTGGGGGAGCGTAGGATGCGCCAGATTAATGAGGTGATGCGT500.11100011100011101No Hit
TCGCCAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT500.11100011100011101No Hit
TCGCCAGGGAGACTGCGGGGCGGACGGTGGACGCGGTTTAGCTCAG500.11100011100011101No Hit
CTTACTGGGAGGTCCCTTGGACCTGCAGGAGCAGAAGAACGTACCA500.11100011100011101No Hit
CCACTGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT500.11100011100011101No Hit
ATGGATGGGGGGGAGAATGAAGTTCGTGTACAAAGAGGAGCATCCG500.11100011100011101No Hit
CGCATAGGGGGGGCCAGGGCCGGAGCGCAACAGAGAGGGAGCGCGC500.11100011100011101No Hit
TCCTATGGGATGGTGAACAAGGCTGCCGACGCTGTCAACAAAATGA500.11100011100011101No Hit
TATCCAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA500.11100011100011101No Hit
TCCACTGCTAATGTGTCTCCCAGGGGACAGATGGCCTTCTTTGTCA500.11100011100011101No Hit
AAGCCAGGGTGGCATGGTTTTCACAAGGTACACGTGTCACGTGTTT500.11100011100011101No Hit
CATACCGGGGCGCGCCCTCTGCCTCGTCCACCGCTGCCGCCTCCTC490.10878010878010878No Hit
GACTCAGGGGGCGAGCAAGATGGCCGCTCCCGAGACCGAGGCCGAG490.10878010878010878No Hit
ATCCTTGGGCAGCCAGCAGGAGTCTGTGTCAAATGCTCAGGGCTCG490.10878010878010878No Hit
GTAACTGGGGCCGACACATGCGCACGGCAGGGCGGGCCCTCTCTCT490.10878010878010878No Hit
CTCCGGGGGCGGAGACCAGAGTTCTGGTTGCCAGACCGGCACGGAT490.10878010878010878No Hit
CCAATTGGGGCACTGAGCGAGCGGCTGCTACGGTCCACGCTTCTTA490.10878010878010878No Hit
CTATCTGGACTCCCCACTGCTGCTTCAGCAGATCTCTGCTATGAGG490.10878010878010878No Hit
CGGCTCGGGGAAGCTCTGGGGAAGCAGATTTCTTGGAAACGATTGT490.10878010878010878No Hit
TGTTGAGGGGGCGGTTCTGGTGCTTAGGACGCGCGGAGGCAGGCGC490.10878010878010878No Hit
CCTGACGGGACTGTCAGCTTTACAGATAAAGCTTACTCTTGCAAAA490.10878010878010878No Hit
TTCATTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA490.10878010878010878No Hit
CCGTCCGGGAGTATGAGCAGAACAAGGCCAATGCACTCCTGATCCG490.10878010878010878No Hit
CGTGCTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA480.10656010656010656No Hit
TTCTTTGGGGAGGAAGCTTGGCCACCAGAGTGGACAGAGGGGCCGG480.10656010656010656No Hit
TGATATGGGGGGAAACAAACCGGCACCCAACACCTTCTACGTGGGC480.10656010656010656No Hit
TTACAGCGGGACTCACTGGTGGGTAGGGGAGGAGACAGAAAGCTTA480.10656010656010656No Hit
AATTCCGGGCAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCAGGTC480.10656010656010656No Hit
ATGCGGGGGATTCGGGGACGGGCCTGCTGGACACCTGTTCTCAGAT480.10656010656010656No Hit
TATTCTCGGGACACTGCAAAATGGGACCAGGCTTCATCCATAATTT480.10656010656010656No Hit
CACACCGGGGGGCGACCTCTTCCTGCGTTCTCACGGCTCTTTCTGT480.10656010656010656No Hit
CACTATGGGAGGCAATGGTTGTTCTCTTTAAAGAGGGAAGGGGTTT480.10656010656010656No Hit
TAGCCTGGGTCCTTTCAGCGGCGCGCGGCTGCAAGATGGCGGTGCA480.10656010656010656No Hit
TTGCCTGGGGACGCTGGGGTTTGCTGCTAGCCCCTGGAGATACCTG480.10656010656010656No Hit
GGCATAGGGGGCCTTCAAGTTTCTCCATGGAGTCATTGTTGCAGCG480.10656010656010656No Hit
ACACAGGGGCTGACGAAGGGGATGTGATACACGTTTCTGGAAACTG480.10656010656010656No Hit
TACGTCGGGGTGCCCATGGCTGTGCCCATCCTCCTGTCCCTGGTTA480.10656010656010656No Hit
TTTATGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA480.10656010656010656No Hit
AGTTCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA480.10656010656010656No Hit
CAGACTGGGATTGGGTACTACTGGCAATAGATTTGTGAATAAATAA480.10656010656010656No Hit
TAACGTGGGGCTTTCTCAGTGACCGGGTGGTTTGCTTAGGCGCAGA480.10656010656010656No Hit
TATTTTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC480.10656010656010656No Hit
TTTAAGGGGGCTTTAAGCAGTGGCTGAAAGGGCAGAGCACGTGCCC470.10434010434010434No Hit
TAAGTTGGGGAGAGGTATGGTGGCCTTCTTCTGCTCTGTTTTTTTT470.10434010434010434No Hit
TTAGTTGGGGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGCAG470.10434010434010434No Hit
CGCAATGGGGACTCCAACTTCCGGCGGAAAAGAAAGTGGGTTCCGC470.10434010434010434No Hit
CATCATGGGGGCTGAGCACTGCAGGAGAGGGTTCCTCCGCCCACGC470.10434010434010434No Hit
ACGCTCGGGCAAGCGGCAGATCCATCTAGAGAGCCAGATGAACTGC470.10434010434010434No Hit
CACTTCGGGGGGACCAGAGGGAGCTTGCTCTTGGAGGGCCTGTGTT470.10434010434010434No Hit
ATGCTCGGGGGGAGCGAGCGCGAGGGGCAAGCGCACACAGGCTCCA470.10434010434010434No Hit
GATGTAGGGATAAGTCAGGGTGAGCGATACTGTCTTAGGCAGGGCA470.10434010434010434No Hit
TGTAACGGGATGGCTTCCGGCGTGATCTCGCTGGTTTGCGCTCCCT470.10434010434010434No Hit
AGTTATGGGGATCCAAGAGCCCACCGCATGCCCTTCCTGGAGGCTG470.10434010434010434No Hit
TTATAGGGGGATGTTCTTGTCATGCCAAATTTATACGGAGACATCC470.10434010434010434No Hit
TAAACAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCT470.10434010434010434No Hit
TTGACAGGGTATTGAGGAGGTTCCTGAGCTGCCGCTGGTGGTTGAA470.10434010434010434No Hit
GCCTACGAGCAAGCTGAGAGCGACATCATGAAGAGGCAGCCCAGAA470.10434010434010434No Hit
TCTCATGGGGGGGAATTCCATGCGAGAGGCCTTGAGCCGTTGGCCG470.10434010434010434No Hit
ACATAAGGGTCTTTGTCTCGGGCCTGAGTTCGTAGGCGCAGCCGGC460.10212010212010211No Hit
AAGCACGGGCTACCATGGGCCATCATCTCTATCCCAGTCAATGTCA460.10212010212010211No Hit
CGACTTGGGGGCCCAAAGAGGACTCATCCCACTGTTCCAGGCATTC460.10212010212010211No Hit
ATTTGCGGGGTCCTCTACCTGGAGGGTGTCAAGTTCAGTGACTTCC460.10212010212010211No Hit
TAGACCGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT460.10212010212010211No Hit
CAACACGGGGAAGGAGTTGACCAGCCAACCGACTCTGCATTCATCT460.10212010212010211No Hit
GACTACGGGGGAGCCTCAATATTTTTTATTTGCTTATTCCTTCATG460.10212010212010211No Hit
TGCTGCCGGGGCGGCGGGTGTGCGAGGCGCGGGCTGTTGTGCTCCC460.10212010212010211No Hit
TCACTAGGGGCTCCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCAC460.10212010212010211No Hit
ATTTTTGGGCCGAGTTACACCAACCAGGACAGAAATCATTATTTTA460.10212010212010211No Hit
GACGGTGGGGGAGAACAGAAAGCAGTTTGCCCTGAAGGTGACAGGT460.10212010212010211No Hit
CTTCACGGGCCAGCAACTCCGTGAAGGCTCTTTCCGTGTTACCCGA460.10212010212010211No Hit
TTTGTAGGGGGAGACAGCAGGAGTTAGGCGCGATGCTTTCCACTGC460.10212010212010211No Hit
AAGACGGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC460.10212010212010211No Hit
GCGTATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT460.10212010212010211No Hit
TCCTCAGGGGCAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGC460.10212010212010211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)