FastQCFastQC Report
Sat 31 Dec 2022
SRR5843229.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843229.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42782
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACAGGGGACAAGAACACTTGAACACACAGAACGGAGACTATGC650.1519330559581132No Hit
CACTATGGGAGGCAATGGTTGTTCTCTTTAAAGAGGGAAGGGGTTT620.14492076106773877No Hit
ACGAGTGGGGCTCATGGAAGGAGATGAGTGCTGAGGAGTAGAAAGA620.14492076106773877No Hit
TATAAGGGGGGCTTTGGTTTTGCTTCTTGGTTTTCATGTATCTGAT620.14492076106773877No Hit
CGCCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC610.14258332943761393No Hit
TGCTTAGGGGTGGGAAGGAGGACCATCACAAGACCTAGGGAGAGGA580.1355710345472395No Hit
TAGACTGGGGGGGCACTGAGCGAGCGGCTGCTACGGTCCACGCTTC580.1355710345472395No Hit
GCATTAGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA580.1355710345472395No Hit
AGATATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC570.13323360291711467No Hit
TATTTTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC570.13323360291711467No Hit
GTTAACGGGTCACACAAGAACTGACGGCACTGATGGAGGACACTAT560.13089617128698985No Hit
TATCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC560.13089617128698985No Hit
AGGCACGGGATACTTGTATAACAGAAATACCTTCTATACAAACCTT560.13089617128698985No Hit
CAACGTGGGGAGATAATGCTGTTGAGATGAATTCATGATCAGTTGT560.13089617128698985No Hit
CTTTATGGGGGAGACCAGGGCTTGACGATGGCGGAGAAGACGCAAA560.13089617128698985No Hit
AGCGCAGGGAGCCCGGGTCGATTATAACAACGGTGCAATCTCAGCT560.13089617128698985No Hit
AGCTGCGGGAGGCCGAGGCCAAGATGGCGGCGCTGGCGGCTCCTGG550.12855873965686504No Hit
CGTCTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC550.12855873965686504No Hit
GTGCAAGGGGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGC550.12855873965686504No Hit
TGTTGAGGGGGCGGTTCTGGTGCTTAGGACGCGCGGAGGCAGGCGC550.12855873965686504No Hit
ACATAGGGATGAAAAGGTCATGTATTAGCTAGATAAGGTGGTGCAG550.12855873965686504No Hit
TATGTTGGGGAAGGCAGGAACTTGGGAAAGGAGTCTGGGCTCTCTA550.12855873965686504No Hit
GCATTAGGGGGGTCTAGGGAATGAGGTTTAGATTCTGGATAGAAGA540.12622130802674023No Hit
CTCAGCGGGCAGCTTAGACCTTTCCAAATAGATCTATTTTCTTAGC540.12622130802674023No Hit
GTACTGGGGACATCATAAACCTGAAGAGGACCTGGGAGAAGCTGTT540.12622130802674023No Hit
TTGCATGGGGGGCCATTGGGACTGGCAAGACGGCAACCCCTCAGCA540.12622130802674023No Hit
TTCTTTGGGGAGGAAGCTTGGCCACCAGAGTGGACAGAGGGGCCGG530.1238838763966154No Hit
TACTTAGGGAAGTTGTGTTAGATGCATCTCCGTTCTGCAGTTAGTT530.1238838763966154No Hit
TATTCTGGGCTCTCGCCAGGCGTCCTCGTTGGAGTGACATCGTCTT530.1238838763966154No Hit
ATATATGGGTGGACGGGAAGGAGGCCATGTCTCTATTCACAAGGAA530.1238838763966154No Hit
TACGTCGGGGTGCCCATGGCTGTGCCCATCCTCCTGTCCCTGGTTA530.1238838763966154No Hit
CTCCAAGGGGGGACCCAATTCTCTACCAGCATCTGTTCTGATTCTT530.1238838763966154No Hit
TCGTATGGGCTCTGCACCAGTGCTGAGCAGCTGCTGACCTGGCACC530.1238838763966154No Hit
TGCTGCCGGGGCGGCGGGTGTGCGAGGCGCGGGCTGTTGTGCTCCC520.12154644476649058No Hit
ATCCTTGGGCAGCCAGCAGGAGTCTGTGTCAAATGCTCAGGGCTCG520.12154644476649058No Hit
AGTTATGGGGATCCAAGAGCCCACCGCATGCCCTTCCTGGAGGCTG520.12154644476649058No Hit
CCAATTGGGGCACTGAGCGAGCGGCTGCTACGGTCCACGCTTCTTA520.12154644476649058No Hit
TTTTCGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC520.12154644476649058No Hit
TCAAGCGGGAGAACCCAGCCAGCCAGCGGAGTGCAAGCAGCAGTGA520.12154644476649058No Hit
TCCTATGGGATGGTGAACAAGGCTGCCGACGCTGTCAACAAAATGA520.12154644476649058No Hit
CTAAACCGGGGGAACCTAAAAAACAAGAATGAGCGTGACAAGTTCT520.12154644476649058No Hit
CTGCCGGTGCTTCCCCATCTGACATGGGAAGGAAGTACTGAATTTG520.12154644476649058No Hit
CCGTCCGGGAGTATGAGCAGAACAAGGCCAATGCACTCCTGATCCG520.12154644476649058No Hit
GCCAGGTTACACATTCCCTGTGTCAGTGGGGAACCCCACTTCTTGG510.11920901313636575No Hit
CTCGCTGGGGAGAGTCTTGTTGGAGCTTTATCCCTTTGTCCTAGCC510.11920901313636575No Hit
CGTTGGAGGCATTGCTCAGATCACCTCCTCTCTCTTCTTGGGCAGA510.11920901313636575No Hit
CAGCCCGGCGGCCGAAGCTGTCAGCGGGGAGGCACGATTTGCTTAT510.11920901313636575No Hit
ATGCGGGGGATTCGGGGACGGGCCTGCTGGACACCTGTTCTCAGAT510.11920901313636575No Hit
TGCACTGGACACCAAGCTAACCCGTATTCCCAGTGCCAAGAAGTAC510.11920901313636575No Hit
ACACCAGGGCGGGGGTGAGCTGTTTTTCCACCTCTCTCGGGAGCGA510.11920901313636575No Hit
TACCTTGGGGGTCCTTAGCGGGCCCAGCGGATCCGGACGTGGAGCG510.11920901313636575No Hit
GACCATGGGTCTCTGAGCGGGTTCCTGGAGCCACACACGGCTGGCT510.11920901313636575No Hit
TCGCCAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT510.11920901313636575No Hit
GTGCCAGGGAGCGGAGAACAGCAGCTACATGCATGTCTACCGAGAA510.11920901313636575No Hit
GCCTGCGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT510.11920901313636575No Hit
GAATCAGGGGTAGGTAACTAGGTAATTTATCGTGGCCCAGACGTGA510.11920901313636575No Hit
TAACATGGGAGGGCAGAGCTCCATATAACCTTGAACAGCCACACAG500.11687158150624094No Hit
TTCTGTGGGGGGCTAGGGCAAAGCTTAGTGCTCAGAAAGAGGCACT500.11687158150624094No Hit
AATCAAGGGGGGATGCTTGACAGCATGTTAATTGAAGCCAGAGCAA500.11687158150624094No Hit
TCAACTTGGGGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAG500.11687158150624094No Hit
TGTAACGGGATGGCTTCCGGCGTGATCTCGCTGGTTTGCGCTCCCT500.11687158150624094No Hit
GCATAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG500.11687158150624094No Hit
CTTCACGGGCCAGCAACTCCGTGAAGGCTCTTTCCGTGTTACCCGA500.11687158150624094No Hit
GTAAGTGGGGCGCTAGTAGATCACAGAACAACCGCCGCATACGGCC500.11687158150624094No Hit
GTCCATGGGGATGTCTTTGGAGAAGCTGATCAGTGATTGCTGACTC500.11687158150624094No Hit
CGATAAGGGGGGTCCAGCACCTGGTCTCCTACCCCGTTTGCAGAGC500.11687158150624094No Hit
TTACAGCGGGACTCACTGGTGGGTAGGGGAGGAGACAGAAAGCTTA490.11453414987611613No Hit
CTTATAGGGGCGAGACCCCACTAACATCAAATGGGGTGAGGCCGGT490.11453414987611613No Hit
GCATAAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT490.11453414987611613No Hit
CCTTAAGGGACTTCCAACTGAGGAGAGCAGAACGGAAAGGTTCTCA490.11453414987611613No Hit
TATCTAGGGAGTTCAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCA490.11453414987611613No Hit
GCTCCCGGGGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGTAT490.11453414987611613No Hit
CGCAATGGGGACTCCAACTTCCGGCGGAAAAGAAAGTGGGTTCCGC480.1121967182459913No Hit
TCATTTGGGACACTGAGAAAGCCGACTTCCGGCGTGGAGTTCTTTC480.1121967182459913No Hit
AAGGTTGGGAGACTAGAGAGTTCAAGGTCCCAGCAGGTTGGTAAAA480.1121967182459913No Hit
TAATGTGGGGAGCGAGCCTTCCGGCTGTAACCGCTGGAGGCTTCTG480.1121967182459913No Hit
TTGAAAGGGGTGTTCCGGTGTTGTACCTCTCCAAATGTTTGCCCTG480.1121967182459913No Hit
CCACTGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT480.1121967182459913No Hit
CGGCCTACAATTGTCATATTTTAATTCCATTACTTTAAGTCTGGAA480.1121967182459913No Hit
CCTGACGGGACTGTCAGCTTTACAGATAAAGCTTACTCTTGCAAAA480.1121967182459913No Hit
GACTATGGGGTCTTCAGGTGTTTCTGGGATGCGTCCTGGGTTAGGA480.1121967182459913No Hit
TTCTCAGGGGGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGCA480.1121967182459913No Hit
AACCGAGGGAGTAAGAGGAAGTACTGCAGGGCTGATGTCGCGACCT470.10985928661586648No Hit
TCACCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT470.10985928661586648No Hit
CCACTAGGGCGAGCCGGTGACCTTAGAGACACCAGCATTCATGTTC470.10985928661586648No Hit
TTCTCCGGGATCCTCAGGACAAACACACCATCGCTGTGTCTGCTCT470.10985928661586648No Hit
TTGTTCGGGGGCACAGGGCCCGGTGGAGCTGGGAATGTCCCGGGCG470.10985928661586648No Hit
ATTTATGGGGGGTCATTGGGCCTGCAGCAGCATCTGCCCAGATGCA470.10985928661586648No Hit
TCCACTGCTAATGTGTCTCCCAGGGGACAGATGGCCTTCTTTGTCA470.10985928661586648No Hit
AGCGTAGGGGCATTGGGTCAGTGGAAACCAAATCCGGGCCTGTCCT470.10985928661586648No Hit
CGTGCTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA460.10752185498574167No Hit
TTTTGCGGGTCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT460.10752185498574167No Hit
CGACTTGGGGGCCCAAAGAGGACTCATCCCACTGTTCCAGGCATTC460.10752185498574167No Hit
CTATGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.10752185498574167No Hit
TTAGTTGGGGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGCAG460.10752185498574167No Hit
CCAAAAGGGACCTGCTACGCTTGGATAACAAGTAACTCAACGCACG460.10752185498574167No Hit
CCAACGGGGCACTGCACATGCTCTGTGTGTGCATTATTTATTTGTG460.10752185498574167No Hit
TACCACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA460.10752185498574167No Hit
TCACTAGGGGCTCCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCAC460.10752185498574167No Hit
ATTTTTGGGCCGAGTTACACCAACCAGGACAGAAATCATTATTTTA460.10752185498574167No Hit
TTTAAGGGGAGAGCTGCCTGGGGTCCCAGTGAGCAGGGGCATTTCC460.10752185498574167No Hit
TACCACGGGGTATCTGGATTTTAGGGTTTCGGTTTTAATTTTGTTT460.10752185498574167No Hit
ACGACAAGGCGAGGAGTGTCGGCTCATCATCCACCTGGCACAGATG460.10752185498574167No Hit
GTAATTGGGCAGAGACATCTACATGTCTCCTCCGGCTTGGACTGGC460.10752185498574167No Hit
GACGGTGGGGGAGAACAGAAAGCAGTTTGCCCTGAAGGTGACAGGT460.10752185498574167No Hit
AACAAAGAGAACCGGGAGGCGCAGATGGCGGCCAAGCTGGAGCGCT460.10752185498574167No Hit
CAAAGGAGGGAGAAGAAGGAGACTGGAGAGACCAGGATCCTTCCAG460.10752185498574167No Hit
CCTGGAGAAGTTCTTCTACTTCAAGCTCAAAGAGGGAGGGCTCATC460.10752185498574167No Hit
TTTGTAGGGGGAGACAGCAGGAGTTAGGCGCGATGCTTTCCACTGC460.10752185498574167No Hit
GTAAATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT460.10752185498574167No Hit
ATGTACGGGGAGGCGACGAAGGGACGTCGCGTCGCCGCGCCGGGTC460.10752185498574167No Hit
TGCAAGGGGCTACCGTAATAATCAATGTTTGTATTTGGCTGGCTTC460.10752185498574167No Hit
TAATGGGCTACGAAGAGTTTGTACAAATGATGACAGCGAAGTGAAG460.10752185498574167No Hit
CAACTTGGGCAAGGCCGAGAATGGGAAGCTTGTCATCAACGGGAAG460.10752185498574167No Hit
GCTATAGGGGGGGTGTCGCTGGGGTCGTTCTCCGAAAACTGCGTGA460.10752185498574167No Hit
GATCTTGGGGCAGGAGCCAGTGCGCACGGATGACGGCCGCGCCATG460.10752185498574167No Hit
TTTCACGGGGAGCATTGCAGCATTCGCAGACTGCAGCTCCCAGACA450.10518442335561684No Hit
ATTACAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC450.10518442335561684No Hit
CATGTAGGGATCCTCCCAGGATTTGGAATTATTTCACATGTAGTTA450.10518442335561684No Hit
TTACATGGGGAGGAGAAAGAAGCACATTTGTTATAGCACAAACTTA450.10518442335561684No Hit
CTCCGAAGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGC450.10518442335561684No Hit
TCAGGGGGTGAGATCCAGACTTGAAGTCACTGATGACCTTGAGAAA450.10518442335561684No Hit
AGCCAAGGACCACCCAGCCTTCGCCCCCTTATATTTCCCCACGGAG450.10518442335561684No Hit
GCCTTCGGGCTCTTTGTCTCGGGCCTGAGTTCGTAGGCGCAGCCGG450.10518442335561684No Hit
ATGCTCGGGGGGAGCGAGCGCGAGGGGCAAGCGCACACAGGCTCCA450.10518442335561684No Hit
GATGTAGGGATAAGTCAGGGTGAGCGATACTGTCTTAGGCAGGGCA450.10518442335561684No Hit
GACGCTGGGGGGATTTGACAGAGTTTATCTTGAATTTACCAGTTCA450.10518442335561684No Hit
TTCCATGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC450.10518442335561684No Hit
GGCGCGGGGAGAGCCGGTTCGGCGCGTCGACTGTCCAGAGTCCGCG450.10518442335561684No Hit
ACACAGGGGCTGACGAAGGGGATGTGATACACGTTTCTGGAAACTG450.10518442335561684No Hit
TATCTTGGGGGCCATCTCAGATCTCGGCCTTGCCAGGGCCCACCAG450.10518442335561684No Hit
ATGGATGGGGGGGAGAATGAAGTTCGTGTACAAAGAGGAGCATCCG450.10518442335561684No Hit
CGATAAGGGGGGGCGACCTCTTCCTGCGTTCTCACGGCTCTTTCTG450.10518442335561684No Hit
ACACCTGGGGACTCTGCGCGGACGCGACCACAGGTATAAAGCGGGT450.10518442335561684No Hit
TTCATTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA450.10518442335561684No Hit
TCTTGGGGGGCACAACAGTCTGCTGAATTAGAGTCTTCTCAAGCTC440.10284699172549203No Hit
TTTGCTGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG440.10284699172549203No Hit
ATATAAGGGCATCAGGATATGGTGGCACCAGAAGACGGTAAAATAG440.10284699172549203No Hit
GCTTTAGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCTG440.10284699172549203No Hit
TTACTAGGGATATCTCTCAGACCAGCAATCGTGGTTCCGGAAGCCT440.10284699172549203No Hit
AAACATGGGGTTCAATTTGGAAACATGCAGCAGAGATTTTCTGTGT440.10284699172549203No Hit
TTCAAAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT440.10284699172549203No Hit
AATAAAGGGCACCAGTTCCTCCTCCTCAGCAGCCCACCAGCCAAAG440.10284699172549203No Hit
TAGCCTGGGTCCTTTCAGCGGCGCGCGGCTGCAAGATGGCGGTGCA440.10284699172549203No Hit
AGTAGCGGGTATGCCACAACTAGATACATCAACATGATTTATCACA440.10284699172549203No Hit
CATTGCGGGGGGTGTGGATACCCAGCACTGGCAGCTACTCGAGGGT440.10284699172549203No Hit
TACTAAGGGGGTCTAGTAATATGATTTCACTATAATTCAATTACAC440.10284699172549203No Hit
GGTTCTGGGGATGCATCAGTGGAATGTTCGTGTTCCTCACCTATGT440.10284699172549203No Hit
AGAATGGGGGGGGGCAGTCTGCCGGACTCTGAGGAAGGAAGCAACC440.10284699172549203No Hit
ATCGTGGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTACCCCTTT430.10050956009536721No Hit
CCTAAGGGGACACTGCAGGACCGCTAGACGGACGACAACTTCTGCT430.10050956009536721No Hit
GACTCAGGGGGCGAGCAAGATGGCCGCTCCCGAGACCGAGGCCGAG430.10050956009536721No Hit
ATTACGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG430.10050956009536721No Hit
CTTGTCGGGGGGCGGCCCGGTGGCCTACGCGTGCGTCCTCACTCTG430.10050956009536721No Hit
ATGTTAGGGGGGTGCTGTGAGATGCAAGGTTTAATTTATGCAGTTG430.10050956009536721No Hit
TGACTTGGGGCAACGGACAAAGAAGAGATTGCCTTCAAAGACCTGG430.10050956009536721No Hit
AGTTATGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT430.10050956009536721No Hit
CCCTGAGAGACCCAAACAAAGTCTTTCCTGAGCACATCGGGGAAGA430.10050956009536721No Hit
ATTCCAGGGAAGGATATTGCTGCCTACAGAGCTAAAGGAAAACCTG430.10050956009536721No Hit
CAAACAGGGAGCTGAGTAGTATGGCATCGAGGAGAATGGAGACCAA430.10050956009536721No Hit
ATTGTAGGGGGCCGCAGCGGCTGGGCTGGAGGAAGCTAGCGCAGCA430.10050956009536721No Hit
CAACTCGGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTA430.10050956009536721No Hit
ACAGCCGGGGAGGGGCGGAGCTTGCGGAGTAAGATGGCGGCCTCCA430.10050956009536721No Hit
AAGCCAGGGTGGCATGGTTTTCACAAGGTACACGTGTCACGTGTTT430.10050956009536721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)