FastQCFastQC Report
Sat 31 Dec 2022
SRR5843222.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843222.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41529
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATTTGGGATATTCAGTTCAAACATCACATTGATGGTTTCAAAGC790.19022851501360494No Hit
TGCGTGCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA720.1733728238098678No Hit
TCTACTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA690.1661489561511233No Hit
GACACAGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA650.15651713260613065No Hit
ACTTATGGGGATTTGAACTTCAGACCTTCGGAAGGAAGAGCAGTCG640.1541091767198825No Hit
GCTCTCGGGTGGCGGAGGTGTGGCTCTTCCTAGCAAGGCTCCCTGC630.15170122083363433No Hit
CGTTACGGGGGGAGGGTTGCGTACCCGACGTAGAGAGAGGCCTGAC620.14929326494738615No Hit
AAATTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA620.14929326494738615No Hit
TTTTGAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT610.146885309061138No Hit
ACTTCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC600.14447735317488983No Hit
TTTACAGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA590.14206939728864168No Hit
GCTTTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA580.1396614414023935No Hit
CGGCATGGGGGAGAACATCAAGGATCCTTTGTTTAGGTTCTTTGAG570.13725348551614536No Hit
ACGCAGGGGAATAGTCAGTAATGTAGCATTTCTGTTGTAATTTCAA560.13484552962989718No Hit
CGGATTGGGGAATGTAAACAATGTAATATCGTTTTTAAATCTCAGA560.13484552962989718No Hit
CTGCTCATCCTTCTGTGCTGTCCATGCCTCTGGGGGGCGGGGTTAA550.132437573743649No Hit
TGTAGGGGGAACTCTTTAGAATTGGTGGTAAATCACCAGATACAAA530.12762166197115268No Hit
ACTTCTGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA530.12762166197115268No Hit
AACTACGGGGAAGGACATGGCGGCCGCGATCGGACAGCCCTGGGAC520.1252137060849045No Hit
CCAGCCATAACACAGTATCAAACTCCACTATTTGTCTGATCCGTAC520.1252137060849045No Hit
AGCTTCGGGGGGCGTTCGTGGTGATTGAACGGAGCCCTGGTGACAG520.1252137060849045No Hit
TCTCGGGGGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTTCTG520.1252137060849045No Hit
TGTTACGGGGTTTCTTGCTGGTCTTATTTCCACAGAACTGTAGGTG510.12280575019865637No Hit
TCTTGTGGGGTGACTGTCAGACCATCTTGGTTTCTGCCACCATTCC510.12280575019865637No Hit
CCCGCTGGGGCAGAAGAATACGCCCAGCAGGAGGTGGTGAAGAGAT500.1203977943124082No Hit
CCTATAGGGGAAGGTAAAAGCGAGCACGGCGCGGAGGAGCCCGGCC490.11798983842616004No Hit
CTCATAGGGGAGGCCAGCCCCTAGCCGCAGCGTGTCTCAGTCGGTT490.11798983842616004No Hit
CCTATGGGGGGTGTCAAAGCAAGGATCTTTCGCCCTTAGAAAGAGA490.11798983842616004No Hit
CTGTTAGGGGCGTGCGCGAGGTCAGGAGCAGGAATCCTGTTCCCTA490.11798983842616004No Hit
TGCTACGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCCTC490.11798983842616004No Hit
TGGCGTGGGGATCTACGCACGGGATGGCCTGGCAGAGTACACCTGG480.11558188253991188No Hit
GTTTAGGGGGACAAGCCAAGCAGAAGAAGCGCGTGACAATTCCTGT480.11558188253991188No Hit
TGATTTGGGGGGTTGTACACTTTGATGCTCGCTAGAATTTGAAGTG480.11558188253991188No Hit
CAAGCTGGGTCAGGAGTGCAGTACAAAGGACATGTGGAAATCCCCA480.11558188253991188No Hit
CACCCTGGGGCTTTCCGATCTGTACCTGGGGCCTCATCACTCCCGG470.1131739266536637No Hit
CAACGTGGGGGGTGACAGGGGGAGGAGCTAGCTGCGAGCGCTGGGG470.1131739266536637No Hit
ACGTCGGGGTCCTAAACATGGCGGCGCCCTTATGTGTGAAGGTGGA470.1131739266536637No Hit
AGCTTTGGGGGGGAGGAGAAGGGGAACTAACCCTCTCTCGGACTCC470.1131739266536637No Hit
TGCTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG470.1131739266536637No Hit
TTGCTTGGGGGGCCCCGGGATGGTGTCTCTTGATTCATCACACGCC470.1131739266536637No Hit
AACATGGGGGGCAGGCAAGGACCCTGAAAATAAACAGCCGCTGCTT470.1131739266536637No Hit
TGGCGGGCATTATGAGCTGGCTAGAGGAAAATGTCCATGAGGTTCT470.1131739266536637No Hit
TAGATGGGGGAGGATGGTCCCCAAAACAACATTCAGGAGGGTGCGA470.1131739266536637No Hit
GTGACTGGGAGAGTCGGGTAGGCAAGGGACAGCGATGAGCTGGGAG470.1131739266536637No Hit
CTAGCCCTGGAGAAACACTGTCGGACGGAAGCCGGCTTCTCGGGGA460.11076597076741554No Hit
TCGCAAGGGGGACTCTCAGAGACACATTCAGGAGAGGACAGGGAAG460.11076597076741554No Hit
GCACCAGGGGAGAACTGGCTTCGCGGTGTGTAGCGGGATGGTTCCT460.11076597076741554No Hit
CATGCTGGTGGTCAGGGGCTACCTTGGATCTTTAGGGCTGACAGTG460.11076597076741554No Hit
TCACATGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA460.11076597076741554No Hit
AGCCTAGGGGTTATCAAGTCCAAGGGTGGTGTTGTGGGCATTAAGG450.10835801488116736No Hit
GGACGGGGGAAAGCCTAAGGGCACAGGATCCCTCAGAAGTTTTGAC450.10835801488116736No Hit
AAAGTGGGGGGAGTCACGTGGTGTGCGTGTCGAAGGTCACGGCGCG450.10835801488116736No Hit
ATCGAGGGGAGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTTC450.10835801488116736No Hit
TACACTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC450.10835801488116736No Hit
CTAAATGGGGGACGTGGAGGACGGCGAGGAACCCTGCGTCCTTTCT450.10835801488116736No Hit
TTGCCTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT450.10835801488116736No Hit
ATCCCAGGGACGGATCTTCGGGCCGGGAGGACATTCGGCCTCTGTG450.10835801488116736No Hit
GCTGTTGACAGTTCTCCCCTGCATCCGAATGGGCCACGAGCCTGGA450.10835801488116736No Hit
TCATACGGGGAAGTTCAACTGTGAGAAATACGGGCATGGTGACAGC450.10835801488116736No Hit
GCAGTTGATCAAGAGACTGGGAAATGGGCAGTTTGGGGAAGTATGG440.1059500589949192No Hit
CAGTGGGGGGATCAATGCAGCTCGGCCGCAGTGCCCTGTAGGGTTC440.1059500589949192No Hit
CGTTCTGAAACCTCATGAAGCCCAGAACTACAGGAAGAAGGCATTG440.1059500589949192No Hit
CTCTCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA440.1059500589949192No Hit
TTAGTAGGGAAGTGGGTGAAGGCGGTTGTGGTCAGTGTAGGCTCCC440.1059500589949192No Hit
GTAGGGGTTTCACAGAAAGGCTCTCGTGCAGCAGTGCAGAAGCCTG440.1059500589949192No Hit
CTGTGTGGGGACTTTTTAAAAGTGGAGCCTCAGGCCAGCCCCTAGC440.1059500589949192No Hit
GTCTAGGGGGGACCGTTTTGTTCTGTGCCCGTGCTAGCTGATAGAC440.1059500589949192No Hit
TGCACGGGGATCTCCATCCCGGCGGTCTCAGTGCACAGCCCCTCCA440.1059500589949192No Hit
ACACTTTCTATGTATTAGTCCCTGTGGCCTTCATGAATGCCCTAGG440.1059500589949192No Hit
CGGCCAGAGCTCTTAGCCGAGCGTAAGATCCCCTGCTTCGAGAATG440.1059500589949192No Hit
GTAACAGGGACCTGATCAGAGCGTGAGGCAGAAATGGCGTCTTCCT440.1059500589949192No Hit
TCTCGGGTGGCGCTAGTAGATCACAGAACAACCGCCGCATACGGCC440.1059500589949192No Hit
TCTACGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA440.1059500589949192No Hit
TCATGTGGGAGACCGCAGGGATGGCGGCAGGGCAGGGTGGGTGGCT440.1059500589949192No Hit
GCTGTATACAAGGCCCTGAGTGACCATCATGTATACCTCGAAGGGA430.10354210310867105No Hit
ATTTTGGGGGGGAAATACGAAGTGAAAGGTACTAGAGCCCCTACGG430.10354210310867105No Hit
TCACCAGGGAGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTTC430.10354210310867105No Hit
TGTTGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA430.10354210310867105No Hit
TCTACAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA430.10354210310867105No Hit
CGCTACGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC430.10354210310867105No Hit
TAACACGGGGCATCATTGAGGAGTCTGGAGAACATATTATTGCTGG430.10354210310867105No Hit
CTTATAGGGGACGCGGAGTGCGGCAAGACAGCGTTGCTGCAGGTGT420.1011341472224229No Hit
TTCGTAGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG420.1011341472224229No Hit
TTTCAAGGGAGTTCGATCGGTAGCGGGAGCGGAGAGCGGACCCCAG420.1011341472224229No Hit
CGTAATGGGGCCCGGCTCCGCGTCCGAGCCTCCTGGAACGACATTT420.1011341472224229No Hit
TGCTTTGGAAACTGACTTGTCCCACTAATAATCGGAGCCCCAGATA420.1011341472224229No Hit
TGATTTGGGGTATAGAGATTACATAGTATAAATATTTATGATACAA420.1011341472224229No Hit
CCTCTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT420.1011341472224229No Hit
GTAAACGGGGAAGTCCTAACTCGGCCATCCTTCTGTCTCCTGTGGA420.1011341472224229No Hit
TCACAAGGGGATAAAACGAATAGCTCGTAACCAAACATGCACAGCG420.1011341472224229No Hit
CCTATGAGTGGGCTGTGCGCTTCATGCTTCGGCACCACCTCACTCC420.1011341472224229No Hit
CCAACAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT420.1011341472224229No Hit
TGCGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGA420.1011341472224229No Hit
ACGCCCGGGGGAGCATCAGTAGACCTAACAATTTTCTCCCTTCATT420.1011341472224229No Hit
CGCCTAGGGTAGTGACCAGACTAAAGATCCAACCTGGATGAGACAA420.1011341472224229No Hit
TAACGAGGGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGT420.1011341472224229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)