FastQCFastQC Report
Sat 31 Dec 2022
SRR5843221.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843221.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39490
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGCCATAACACAGTATCAAACTCCACTATTTGTCTGATCCGTAC670.16966320587490502No Hit
TCTACTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA670.16966320587490502No Hit
TGCGTGCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA640.16206634591035704No Hit
ACTTCTGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA610.15446948594580906No Hit
TTTTGAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT560.1418080526715624No Hit
AACTACGGGGAAGGACATGGCGGCCGCGATCGGACAGCCCTGGGAC540.13674347936186376No Hit
TGGTGCGGGGATCTGTCCCTGGGGGGAATTCAGATAAAACGAATAG530.13421119270701443No Hit
CGCTACGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC530.13421119270701443No Hit
CATGCTGGTGGTCAGGGGCTACCTTGGATCTTTAGGGCTGACAGTG520.13167890605216512No Hit
GACACAGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA520.13167890605216512No Hit
GTACACGGGGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTTCT500.12661433274246645No Hit
TCAACACGGGATGACCCACCAAACTCATGCATATCACATAGTTAAT490.12408204608761711No Hit
TTTACAGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA490.12408204608761711No Hit
CTCTCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA490.12408204608761711No Hit
TCATACGGGGAAGTTCAACTGTGAGAAATACGGGCATGGTGACAGC490.12408204608761711No Hit
ATTTTAGGTGCAATTAATTTTATTACCACTATTATCAACATGAAAC480.12154975943276779No Hit
TGTAGGGGGAACTCTTTAGAATTGGTGGTAAATCACCAGATACAAA480.12154975943276779No Hit
GCTCTCGGGTGGCGGAGGTGTGGCTCTTCCTAGCAAGGCTCCCTGC480.12154975943276779No Hit
CTTATAGGGGACGCGGAGTGCGGCAAGACAGCGTTGCTGCAGGTGT470.11901747277791846No Hit
TCGCAAGGGGGACTCTCAGAGACACATTCAGGAGAGGACAGGGAAG470.11901747277791846No Hit
CTCTGCGGGTTGGTACCATTGCGGAAAATGATTGCTCCTCCCTTGC470.11901747277791846No Hit
CCAACAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT470.11901747277791846No Hit
TCTTTAGGGGGTTGCAGGCAGGAGCTGGGAGGAGGCAGCAGCAGCG460.11648518612306913No Hit
ACTTATGGGGATTTGAACTTCAGACCTTCGGAAGGAAGAGCAGTCG460.11648518612306913No Hit
ATCATCGGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGA460.11648518612306913No Hit
CCTATGAGTGGGCTGTGCGCTTCATGCTTCGGCACCACCTCACTCC460.11648518612306913No Hit
TGGCGGGCATTATGAGCTGGCTAGAGGAAAATGTCCATGAGGTTCT460.11648518612306913No Hit
ACGACTGGGAGGGTGTGTGGGGCGTCAGCGCGATGGCTCCGGCTGT460.11648518612306913No Hit
TGCTACGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCCTC460.11648518612306913No Hit
GCCTGTTTGCTTCCTGTGCGGTGGTATCAATATGTAACAGTGCCTG460.11648518612306913No Hit
TCAGCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC450.1139528994682198No Hit
TTACTTGGGACCCGATGAGGGAACCAAACTGAACGCCTAAACGCAG450.1139528994682198No Hit
CTAGCCCTGGAGAAACACTGTCGGACGGAAGCCGGCTTCTCGGGGA450.1139528994682198No Hit
GCTTTTGGGGAGGAGAAGATGGCGGTCTCCACAGGAGTTAAAGTTC450.1139528994682198No Hit
CACTAAGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGA450.1139528994682198No Hit
TAATCTGGGGCAGACCTGTGCATTCGCCGCGGTTGTCGTAGTTCCG450.1139528994682198No Hit
CATACTGGGGGTATAGCTTCCTCAAGTAATAATTTATCTATCTGGT450.1139528994682198No Hit
GCTTTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA450.1139528994682198No Hit
ACACTTTCTATGTATTAGTCCCTGTGGCCTTCATGAATGCCCTAGG450.1139528994682198No Hit
CGATTTGGGATATTCAGTTCAAACATCACATTGATGGTTTCAAAGC450.1139528994682198No Hit
CATGTTGGGGGGGGCGAGGTGACAGAGGACCGGGTCGCCGAGGTCC450.1139528994682198No Hit
GACTACGGGAGCAGTATGGGCAGTCTTCTTCCAAAGCCAACTTTGT440.11142061281337048No Hit
ATCTAAGGGCTTCTCATCTGCTATACAACTAACGCCTTCCCCAAGG440.11142061281337048No Hit
CGTTACGGGGGGAGGGTTGCGTACCCGACGTAGAGAGAGGCCTGAC440.11142061281337048No Hit
CAAGCTGGGTCAGGAGTGCAGTACAAAGGACATGTGGAAATCCCCA440.11142061281337048No Hit
CTGTGTGGGGACTTTTTAAAAGTGGAGCCTCAGGCCAGCCCCTAGC440.11142061281337048No Hit
GTGACTGGGAGAGTCGGGTAGGCAAGGGACAGCGATGAGCTGGGAG440.11142061281337048No Hit
GTAACAGGGACCTGATCAGAGCGTGAGGCAGAAATGGCGTCTTCCT440.11142061281337048No Hit
CGCATAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT440.11142061281337048No Hit
TCAGTCGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA430.10888832615852115No Hit
TGTGTTGGGGTTTTTAGGGATGTGCAATGTGCATGTCAGAATTATG430.10888832615852115No Hit
AGCTTTGGGGGGGAGGAGAAGGGGAACTAACCCTCTCTCGGACTCC430.10888832615852115No Hit
ACTGCAGGGAAATTAGCAGAGTACGGAAAGACATGTACAATGACAC430.10888832615852115No Hit
CCGCGGGGGGGCTCTGGCCAACTTGTCAAAGGATGGCTCCGGTGAG430.10888832615852115No Hit
CAGCTCGGGCTTCGAGATGGATGAGGAGGAGCGGGTCCGGGTGCTG430.10888832615852115No Hit
AATTTAGGGCACTTTAAGAAAAGAACCTCATTTTAAAATAAATCCA430.10888832615852115No Hit
GTTCAAGGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGT430.10888832615852115No Hit
CGCTCCGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC430.10888832615852115No Hit
TGATGGGGGGTGGCAGACGCTGAGGCCGGGGGAGAGACTCTGAACT420.10635603950367183No Hit
ACTCGCGGGGAGTTCATTCTCGCCTGTCAGCAGATGACTGTGGCAG420.10635603950367183No Hit
CGGCATGGGGGAGAACATCAAGGATCCTTTGTTTAGGTTCTTTGAG420.10635603950367183No Hit
GTACACGGCGATCTGCTTGAGGGATGACAAACATACGAAAAACACA420.10635603950367183No Hit
CTGCTCATCCTTCTGTGCTGTCCATGCCTCTGGGGGGCGGGGTTAA420.10635603950367183No Hit
TGCTAAGGGGGCTGGAAGGTAGAAGGATGAGCCCGTAGGTGTTTGC420.10635603950367183No Hit
TGCTATGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA420.10635603950367183No Hit
TGCTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG420.10635603950367183No Hit
ATTGCTGGGGACCGGAAGCCTCTTCTACTCCGGCTTCCTGTCTTTA420.10635603950367183No Hit
TGTTACGGGGTTTCTTGCTGGTCTTATTTCCACAGAACTGTAGGTG420.10635603950367183No Hit
GTCTAGGGGGGACCGTTTTGTTCTGTGCCCGTGCTAGCTGATAGAC420.10635603950367183No Hit
AACCGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTTTT420.10635603950367183No Hit
TCTCGGGGGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTTCTG420.10635603950367183No Hit
CTCATAGGGGAGGCCAGCCCCTAGCCGCAGCGTGTCTCAGTCGGTT410.10382375284882248No Hit
TATGACAGGGAGGTCGGGAAAGATACACTATCAACATCCCTGAAGA410.10382375284882248No Hit
GCGTACGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC410.10382375284882248No Hit
AGCACAGGGGGTTTTGGAGGTGGCCCAGCATTTGGGGGAGAGCACG410.10382375284882248No Hit
TGTCTTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA410.10382375284882248No Hit
GCATATGGGAACCCAGACCAGCAGGATGCAGAACCGCACAAACGAC410.10382375284882248No Hit
GAAATGGGAAGGCCAATGTGGAGCATATGACAGAGAAGATGAAGAC410.10382375284882248No Hit
CACCATGGGGCTCCGCCCCCAGGCTGCCCGCTCTGTCGCCTAATAG410.10382375284882248No Hit
GCCGCTGGGGCTACATCTCCCGGCTCAGACCCGGGGCGCTTCGCAA410.10382375284882248No Hit
AGCTCCGGGGTATTACAGAAGAGCTGGGAAGGATACTGAAGAGCTG410.10382375284882248No Hit
ACTACAGGGGTTACTTACTACTCCGGAAAAAAAGAACCTTTCGGCT400.10129146619397315No Hit
TTCGTAGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG400.10129146619397315No Hit
ATGCGCGGGGACACAAACAGACCGGGCACTTCCGCTTCCCCTCCGC400.10129146619397315No Hit
ACAACTAGGGGGAGTACGCAGGCGCGGCGACGTCATTGACACGCGA400.10129146619397315No Hit
AATCCGGGGGAACAAGAGCATTAACCCCGATGAAGCTGTTGCCTAT400.10129146619397315No Hit
TACTGTGGGCACCACTGGATGGTTTGGTGGGTAGTTAAGGAGCAAA400.10129146619397315No Hit
TTGAAAGGGGAGACTGCCGCCCGATGCAATGCTGTCGATCATTGCA400.10129146619397315No Hit
TAACATGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC400.10129146619397315No Hit
CCCTCCCTCAGAGCATTAAGCACACTGTAGAGAATGCAGACACGTA400.10129146619397315No Hit
TTTAAAGGGAGAGTTGTGCAAGAAAGACAGCCTTTACAAGGATGCA400.10129146619397315No Hit
GTAGGGGTTTCACAGAAAGGCTCTCGTGCAGCAGTGCAGAAGCCTG400.10129146619397315No Hit
AGACAAGGAGGACAAGTGGATCCGGATTTCCATGGAGAAGGGGGAC400.10129146619397315No Hit
ACTGTTGGGGAGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTT400.10129146619397315No Hit
TATGGTGGGGGATAACAGAGTGCACTCTGCTTGGTTAGATGGAGAC400.10129146619397315No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)