FastQCFastQC Report
Sat 31 Dec 2022
SRR5843218.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843218.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55161
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTAAGGGACCAGCATCCATAGCAGACAGGACACAACTGAGTGTA920.16678450354417068No Hit
TGCAGTGGGGGGAACAAGTGTGGTTGCACCGACACCGGTACATAGG710.1287141277351752No Hit
CACATTGGGAGAGGCTGACAGCAGCAGGAAGGCTTCTGCCAGCTCC710.1287141277351752No Hit
CCGACAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT680.12327550261960443No Hit
TTGAACGGGGGGACAGGAGGCTGGAGAAGCAGACTGGGTGTTTTAC680.12327550261960443No Hit
TGAAAAGGGATTTCCCATGTGGTTTTTATGTTTTAATATTAGGGGA670.12146262758108084No Hit
CATGAAGGGGTTTCCAGGCACAGAATTTGAAATGTAAGTTAGGATG670.12146262758108084No Hit
TCATTAGGGGTGAACGGAGAAGCGGACGCCATGACTTTGGATGGAG660.11964975254255723No Hit
TTAAAGGGGGGAGGATAGGCTTTCGGCACCTATCTCCGTCTTGTTG640.11602400246551005No Hit
GCTCGCAGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT630.11421112742698646No Hit
ACATGGGGTGCAATGTGTCCGGTGCACTGCCCCCACCAGGCCGTCA630.11421112742698646No Hit
TGCTATGGGACTTTGAGACAACCTGCAATGACATCAAAGATATCTA630.11421112742698646No Hit
GTCATAGGGAGGGCTCAGCTTGGCATTGGTGGTTTGAAGGAGTCGG630.11421112742698646No Hit
AAAGCTAGGGCTCTCGCCAGGCGTCCTCGTTGGAGTGACATCGTCT630.11421112742698646No Hit
GTTTATGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATCTGCCTC620.11239825238846285No Hit
CTTAACGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT620.11239825238846285No Hit
GCCTTTCTGTGTACTTACTCCAGCCATTTGGGGTGGTTATTGGGCC610.11058537734993927No Hit
TCTAATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC610.11058537734993927No Hit
GCGAACGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG600.10877250231141568No Hit
TGCCCCGTGCCACCCTTCCTTCCTTCCTTTCTCCTCCAAAGCCTTT590.10695962727289207No Hit
ATGACAGGGATCTCATCCAGGGCGATCTTTGCTGGGGGGTGAAGGA590.10695962727289207No Hit
TTAGAAGGGGTGTCTGATAAATCCTTGTGTGTGCCCCAAATGTGAA590.10695962727289207No Hit
TTAGATGGGGTACTGAGTGTCTCCTGGGGGTGAATCCCAGGCACCG590.10695962727289207No Hit
AAACTAGGGGCACAGCATTAGCAGCAGTCCCCAAACCCTGCTGGCT580.10514675223436849No Hit
AGGCCTGGGAGGGCGAAAGTCGGCCACTTCCTGGAGACCACAGGTG580.10514675223436849No Hit
CAACCAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA580.10514675223436849No Hit
TAGTCAGGGGGACGGACGCAAGATGGCGACGGCGACTATAGCTCTC580.10514675223436849No Hit
TGCTTAGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGA580.10514675223436849No Hit
GTCAAGGGGGAAGCAGAAGCTCTTAGAATTTTTGCTCATGGACATG580.10514675223436849No Hit
CAATATGGGACGCAGGAGCTATCCAGCACGTCAGCTCCCTGTTTTG580.10514675223436849No Hit
TTACTTGGGGAGGGAGATCAGGTGACTCCGGGCTTCCAGCGCAGGA570.1033338771958449No Hit
TTATGAGGGGATGCACGCTCAGCTTTTAGGTGTAAGCCGCAAACAT570.1033338771958449No Hit
CAAACTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT570.1033338771958449No Hit
TCGCTGGGGATCTGATTCTAGAGAGTCTGGCCGCACTGTCGAATCC570.1033338771958449No Hit
CATGCTGGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGC570.1033338771958449No Hit
AGCCTGCCTTGCCTGCTCACCCTCGTGCCCGTGGCTACCTAGTGGG560.1015210021573213No Hit
TCACAAGGGGGAGTGAAAGCTCTAATTGATTTTGCAAGCATCTCCT560.1015210021573213No Hit
GATCGTGGGACGGAAGGTATAGGCAGCCTGGGCCCTGGCTATGAGG560.1015210021573213No Hit
TATGAAGGGTCACTGGGGCTCATCTGATGGCCAGGGCTCTGAGCAC560.1015210021573213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)