FastQCFastQC Report
Sat 31 Dec 2022
SRR5843217.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843217.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52455
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTAAGGGACCAGCATCCATAGCAGACAGGACACAACTGAGTGTA930.17729482413497283No Hit
TGCTATGGGACTTTGAGACAACCTGCAATGACATCAAAGATATCTA740.14107330092460205No Hit
CAATTTGGGCTGCTCCGGGAGGGATGACACTAAAATGTACACATCC690.1315413211323992No Hit
TTAGAAGGGGTGTCTGATAAATCCTTGTGTGTGCCCCAAATGTGAA660.12582213325707747No Hit
GTCATAGGGAGGGCTCAGCTTGGCATTGGTGGTTTGAAGGAGTCGG660.12582213325707747No Hit
TTTACTGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT650.12391573729863693No Hit
GCTCGCAGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT640.12200934134019635No Hit
CCGACAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT630.1201029453817558No Hit
CTTCATGGGCAGCTGCCCAACAATACTTCCCTGGTCATTGACGAGA620.11819654942331523No Hit
AAGTATGGGGATTTTGAGAACATGAAGCGCAAACAGAATGATGTCT620.11819654942331523No Hit
AATCATGGGGACACTGCAGGACCGCTAGACGGACGACAACTTCTGC610.11629015346487466No Hit
CTTGACGGGGGAATGCAGCAACAGATGCCAACACTACCTCCACCCT590.11247736154799351No Hit
TTATGAGGGGATGCACGCTCAGCTTTTAGGTGTAAGCCGCAAACAT590.11247736154799351No Hit
GCGCATGGGCGATGGATGCTGAGCCTGACTAAGAAGATGGAGGTCA580.11057096558955296No Hit
TAGTTAGGGTGGTCAGGTTCCAGAACAAATGCAGTGACATAGTGTT580.11057096558955296No Hit
CAACCAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA580.11057096558955296No Hit
AGCCCTGGAGTTGGTGGTGGGGGATAAAAATTGCTCCAGGAGGAAT580.11057096558955296No Hit
TACAACGGGCATTTATGGTGGGAGGAGTTGAAGATGAGTTTGCTGC580.11057096558955296No Hit
TAATAGGGGGTCTGAGGAGGCCTTCACCCTGCCCCTTCTCAACGAC580.11057096558955296No Hit
TGTAATGGGATAGCTTGCTTTGCTCCAGCTTGCTTCTAGCTAGGTT570.10866456963111237No Hit
CAGCTTGGGTTCAGATAAAACGAATAGCTCGTAACCAAACATGCAC570.10866456963111237No Hit
AATAAAGGGATCAATAGTAGGGATGTCAAAGTTCAGGTGATGGGAA570.10866456963111237No Hit
GCAAGAGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT570.10866456963111237No Hit
CATGAAGGGGTTTCCAGGCACAGAATTTGAAATGTAAGTTAGGATG570.10866456963111237No Hit
AGGTAAGGGGAGAGAGAAAGACCCAGCCAAATAAGAGGGTTAAGGT570.10866456963111237No Hit
AGTATAGGGGGAGGTGTCAGCGAAGGTAGCGCAGCCATGGCGGCAG560.10675817367267182No Hit
CAAAGCTGGCCTTTAACTCACAGAGATTCACCTGCCTCTGCTGCTG560.10675817367267182No Hit
TCTCATGGGGATCTAACCTCGGGGGGAATTCGAGCTCTTTCGACGT560.10675817367267182No Hit
GCTCTAGGGGTCAGCATGGACTACACAGTGAAACCTTGTCTTAAAA560.10675817367267182No Hit
CATGCTGGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGC560.10675817367267182No Hit
TCTCTGGGGGACAGCGGTGTCATCTGTCTAGGTAGCGGCTTCACCG550.10485177771423124No Hit
AGTTTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC550.10485177771423124No Hit
AGTACCGGGTGAGCTCAAACCCGGAAGCGAGAGAGAGAGAGAGAGA550.10485177771423124No Hit
GAAGTCGGGAGCCGCAGCGTGTCTCAGTCGGTTGTCGAGTCCCTTC550.10485177771423124No Hit
TAGCGCTGGGTCAAGGATATTTGCCTGACTCTGAAGACAACAAACA550.10485177771423124No Hit
CAATATGGGACGCAGGAGCTATCCAGCACGTCAGCTCCCTGTTTTG550.10485177771423124No Hit
TCTATAGGGATCAAGGAGGCAAAACAGCGGCTATTCTAACTGAAAT550.10485177771423124No Hit
GTTAACGGGGCTTCAGGAGTGCCTCACGTAGATAGATTGAGGTTTT540.10294538175579068No Hit
CGCCTAGGGCTACATTCTGAGCGTGATGAACGTGCCGAACTTTGAC540.10294538175579068No Hit
TTTCATGGGACTGAGCCGCTGCTGCTGTCGCGCAGTCCGCTCCTCC540.10294538175579068No Hit
ATGGGGGGGTATGGACATCTATTTTAGAAACACACATTCTTCAAGG540.10294538175579068No Hit
TCAAAAGGGGAAGCTCATTCTTTGGAGCGGGTGTGTCATTGTTTGG540.10294538175579068No Hit
GCAATCGGGGGGGTGTTACCCCAAGTTCATGGCTCCTGGGAGAGTC530.1010389857973501No Hit
TTACTTGGGGAGGGAGATCAGGTGACTCCGGGCTTCCAGCGCAGGA530.1010389857973501No Hit
AAAGTAGGGGGGGTGCCATCATGGCGGACGCGGCCAGTCAGGTGCT530.1010389857973501No Hit
AAAGCTAGGGCTCTCGCCAGGCGTCCTCGTTGGAGTGACATCGTCT530.1010389857973501No Hit
ACAGACGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT530.1010389857973501No Hit
ATCCGTGGGGAGAACTTGTTGACGCCGCGCGGCAGCCAGGCTAGCT530.1010389857973501No Hit
AAGAGGGGACACCGGAGGGAGTTCTTTGGGCCGCCACCGCCGTACT530.1010389857973501No Hit
TACTGGGGGTCCTGGTGATCTGAGGCTTCTCTGTTTTAATTTTTTA530.1010389857973501No Hit
GTGACAGGGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAA530.1010389857973501No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)