FastQCFastQC Report
Sat 31 Dec 2022
SRR5843214.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843214.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47157
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACATGGGATGGCAGAGTACTACGAGAGCTCTAATTGTGCCATCC670.14207858854464872No Hit
TAACAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT640.13571686069936595No Hit
CATTGTGGGGGCCGGAAGTTAGCGTCTCCTGGGTGAAGCGGCCTTG640.13571686069936595No Hit
CTACCTGGGGAAAAATGAAAAGTATCTCGGCTTTGGAACACCATCT620.13147570880251075No Hit
TTTTTTGGGGCATTGAAAAGATTGTGAACGGAGAAGCGGACGCCAT610.12935513285408318No Hit
CATTGCGGGCTTTCGCGCTACCCGGGGACGGGTCCATACGGCGTTG610.12935513285408318No Hit
GCTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG610.12935513285408318No Hit
GTGGGGAGACGTTCGTGGTGGAGTGAGAGGTTCCCAGGGGAGGAAT610.12935513285408318No Hit
TTAGCTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT600.12723455690565558No Hit
GACGCTGGGATTACATAGGTGTCTCTCTTGGCAGCATCATAGCTAT600.12723455690565558No Hit
TTAGAAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC590.12511398095722798No Hit
AAGCAAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT560.1187522531119452No Hit
GGCTCCCCAGTTCCCAGTGTTGCCAGTCTCTAAGTCAGCAGGGCAG560.1187522531119452No Hit
TAGCCCGGGGGACCTTCAAGGCTCCACCATGTTCTCGCGGGCGAGC550.1166316771635176No Hit
TTCATTGGGGGGGGAGAATCCGCGTTGAAGAACAGAGCATTTAGCT550.1166316771635176No Hit
TCGCCAGGGTAACAGAAATGCAGTGTCTCATTTTGCTGGGTAAGAG550.1166316771635176No Hit
CAGCCTAGGGGCTCTCGCCAGGCGTCCTCGTTGGAGTGACATCGTC540.11451110121509002No Hit
CAGCCCGGCGGCCGAAGCTGTCAGCGGGGAGGCACGATTTGCTTAT540.11451110121509002No Hit
ATATAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA540.11451110121509002No Hit
GACTTGGGGGAAACAAATCTTTGCAAGAAATCTGTGAAGGCTTCCC540.11451110121509002No Hit
GGACTTGGGCTGCATGAAGCAACGATTAAAAAAGAAAATCACAAAA540.11451110121509002No Hit
AACGATGGGGCTCTGTTTCTCCGTGGCCGTGATCCTTGTGGCTGGC530.11239052526666243No Hit
GCATTTGGGGGTTTTTACTCATTGGTAAAGTGTACAGAGAGTAAGA530.11239052526666243No Hit
TTCTATGGGGATAGACATCCCTCAGGCTTTGGTTGCTGGGGACTCT530.11239052526666243No Hit
TAACTTGGGCAGTTTTCTTATGGAACCAAAGAAACTTCCTACGGCC530.11239052526666243No Hit
AGACTAGGGATGGGAAGGGCAAACCTGTGCCCATACATGGCAGCCG520.11026994931823485No Hit
CAAAATGGGGTTGTAGGAGGGTTGTAGATCATCATGTTGCCATCCT520.11026994931823485No Hit
CATATAGGGAGGGAAGCTGCGAGCCTCGAAGTGCGTTTGGGCTCGC520.11026994931823485No Hit
TAAGTCGGGCTTCCTAGATTGCAGAGCTTTCATATCCACGATGCGT520.11026994931823485No Hit
TGCAACGGGGGACATAAATCAGGCTCTGTCAGCTGCCAGTCTTTAC520.11026994931823485No Hit
GTTTGCGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG520.11026994931823485No Hit
TCACGTGGGGGAGGAAGATGAAAATACATCCTTAGTTGCTTGGACA510.10814937336980723No Hit
TTAGCAGGGACCCTCGGTCCGGGACAAGTTTATCTTGTGACTGCTC510.10814937336980723No Hit
TATAGTGGGGCTCCTTCCCCAGCCGCCTTCAGGACAGCCGCAGCCT510.10814937336980723No Hit
TTATATGGGGACTTTGGCTGGGCACTCTCAGAGCCAGGGTCCTTCC500.10602879742137965No Hit
CTATTAGGGGAGTCGCAGCCCCGGAGCAGCGCCGGGAGCGCGGCCA500.10602879742137965No Hit
CCAGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTGC500.10602879742137965No Hit
GAACATGGGGCTTTTAGGTGTAAGCCGCAAACATCTTGGACCCCGG500.10602879742137965No Hit
ATCTGAGGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAG490.10390822147295206No Hit
GCTCTCGGGGAATCAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGC490.10390822147295206No Hit
ATCCATGGGGTGTATCGCGAATGCTGGCCCATCCCTTACACGTGAT490.10390822147295206No Hit
GGGGCAGAGATGGCCTCAGAAGTCGAGGAACAAATCCCTGTGCGTG490.10390822147295206No Hit
TGGCATGGGGGAGATGGGTCCGTCGGCGCCATTGTGCAGCGCTGCT490.10390822147295206No Hit
TCGTCCGGGACTGCTGGAGACTGCCTTTTGCAGGTGCAGAGATCGG490.10390822147295206No Hit
TTGTAAGGGGCTCTGGACCGGGCGGCCACTGCGCAGAGTGGAGGTC490.10390822147295206No Hit
GCTTTTGGGGGGACACAGAACTGGAAGTGACTTCTCTAGAAACCCA480.10178764552452445No Hit
TTCATAGGGGAAGCAGAGTATGTGGACATCCACTATCTCCAGCCAC480.10178764552452445No Hit
CAAGCGGGGAATGCTGGAACATGCAGAGGCTGCACAAGACTTTGCA480.10178764552452445No Hit
CTTACTGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT480.10178764552452445No Hit
TCTCAGCGGGCAACCAAATAGGACCAATGGAGATAAGCTACGAAGA480.10178764552452445No Hit
ACTAAAGGGATCCCGGGCGGCGCGAACGGCCCAGCCATGTCCGCAG480.10178764552452445No Hit
CAGTAGGGGAGGAAGCGGAAGGGAAAAGATGGCGGCGCCGAGTGTC480.10178764552452445No Hit
AACACGGGATGGCGGCTTCGAGCGCAGAGCGACATGAACGCGGATG480.10178764552452445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)