FastQCFastQC Report
Sat 31 Dec 2022
SRR5843210.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843210.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38678
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATGGGGGTATAGGAAAAAACAAAGAAAGAAAGAAAAGAAAAAG620.16029784373545686No Hit
TCATCTGGGAGAACAAAGAGGCGTTCTGCTTGAATCTGTAAAAACA510.13185790371787579No Hit
CTCTCTGGGATGCATTGGGTCTCATTCATGCCAATCATGGTGGTGA490.12668700553286105No Hit
CCAAAAGGGCTTGAACAGGAACCTGAGTGACAGCCTGGCCCGAGGA450.11634520916283157No Hit
AAATGTGGGAGAGACAAGTTGATTGTGGTCTGCATGCTCTCTCCTT440.1137597600703242No Hit
CACTAAGGGGTTCGGAAGGCTCTCCACATCCCCGAGTCGCTGCCCC440.1137597600703242No Hit
AAGTTTGGGGTGGTCTTTTGGGGTTTGCTACTCGGAAGTCAAGATG430.11117431097781684No Hit
ACTCAGGGAGAGGACGATACTCAAGAAGGAAATGAAGACCACCAGC430.11117431097781684No Hit
AGCAATGGGCGACCAGCGCCGAGCAGCCCTGGAAGGTTTCCTGGCA430.11117431097781684No Hit
CTTAACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC430.11117431097781684No Hit
TTCGCAGGGATGGAGTTGAGTTATAGGTGTACCATCTCAGGTATGG430.11117431097781684No Hit
AACTCTGGGATGACTTCAAAACCACATATGACCAGATGTACAATGA420.10858886188530947No Hit
TCACCGGGGGGTCGGGGGCGCGCTCGGGTAACCTGTACCCCGTCTA420.10858886188530947No Hit
CAACTTGGGGTTCAGGTAGCAGAGGGCCGTGCTCTCCTCGCCTGAT410.1060034127928021No Hit
TCTCAAGGGAGGCCAAGCCTGACTCATAAATAGGGGGTCTCCACAG410.1060034127928021No Hit
GCGGCCGGGGATCAAACAACAAAAATTAGATATTACAAAATATTGA410.1060034127928021No Hit
TGATGAGGGGTCTGCTGGAATTTGGGAGGGAATTGAGTCTTGCTGG410.1060034127928021No Hit
AAACGAGGGGCTTCTTCTTCTTCGGGAGAACACCAAATGGCGGATG410.1060034127928021No Hit
ACCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCAGCA400.10341796370029474No Hit
CGTCTCGGGGGAGCATCATCAGTGAGGGAAAGATAGAGTGTGAGTC400.10341796370029474No Hit
TCAGTGGGGGACAGTGGAGGTATCTCCATCAAGGCTTCTGCAAACA400.10341796370029474No Hit
TTCAATGGGTCAACTGTTGTGGCTCCAACGCACTGACCACACTGAC400.10341796370029474No Hit
TGTACTGGGTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATTGC400.10341796370029474No Hit
GCCATCGGGGTGTGGGCAGAGTCACTTTAAAGTTCCATCTGTTAGA390.10083251460778737No Hit
TTCGCATGGGGAAGACTGTGATCGACTCCCAGACACACTATCGACT390.10083251460778737No Hit
AACATGGGGGACAACAAGATTGAACAAGCCATGGACTTGGTGAAGT390.10083251460778737No Hit
AAATTAGGGACCATTGGGCCTGAGGGCCAGGGGTCTCCAGCATGAC390.10083251460778737No Hit
ATACGCGGGATGTTAAAAAGCAATTTAAGATGAAAAAACTAGCTTT390.10083251460778737No Hit
CGTTATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA390.10083251460778737No Hit
TCTGCTGGGCTTCCGATCTAAAAATGGGAAGAAATTCAAGGTCTGA390.10083251460778737No Hit
ACATTTGGGAGAGATAGATGATTCCCAGGATGATTCAGATGAAGAT390.10083251460778737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)