FastQCFastQC Report
Sat 31 Dec 2022
SRR5843209.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843209.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36916
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT560.15169574168382274No Hit
AGGATGGGGGTATAGGAAAAAACAAAGAAAGAAAGAAAAGAAAAAG500.13544262650341315No Hit
CGTTATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA500.13544262650341315No Hit
GGCCTAGGGCCCAAACTCAGTGCATTTTTTAAAAATAGTTAAAAAT500.13544262650341315No Hit
GATTGCGGGGTCCTCCATCCAGTGCATCTGCCACGTGATCAAGCAG470.12731606891320835No Hit
TGCAGGGGGGGCCCCTGCGAGAGCGGCAAAACAGTGTTGGCCAACT460.12460721638314011No Hit
AGGAATGGGGCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCAG440.11918951132300357No Hit
TAGTCAGGGACCCCAGAGACAGTGGTTCCCAGCCCAGCCACAGGTC430.11648065879293532No Hit
CCAGATGGGGGACGCGGTACCCTAGAGCTTCTTAGCTGACTCTGGC430.11648065879293532No Hit
GTGAAGGGGTGAATGTGCTCGGGCTTGTACCTGTTCCAAATAGAGA410.11106295373279879No Hit
AGGCAAGGGGGAACAACCAGCGACTGCGTGAGCGGGGCTGTGGATC400.10835410120273054No Hit
TTGTAGGGGAGAGACTGGAGTTTACCACGGAGACTGCCCCGCAGCG400.10835410120273054No Hit
CTCACAGGGGGAGGTGAGCAGCGCCTCTATGGCGGAAGATCTCTGC400.10835410120273054No Hit
CGCTCAGGGACAGACCATGGTCTCAGGGCTCTGACTCTGGGAGGAG400.10835410120273054No Hit
TTCACTGGGGCCTCTGTGCGGCCCTGCCTAACGCCCGCACCCACCC400.10835410120273054No Hit
TCATGCGGGGATGTGATACACGTTTCTGGAAACTGCCTCGTCATGC400.10835410120273054No Hit
GCTACTGGGAGTGTTCTTGAGTGTCTTCTTTAGTTGAAATAGGTTA400.10835410120273054No Hit
AAATGTGGGAGAGACAAGTTGATTGTGGTCTGCATGCTCTCTCCTT390.10564524867266226No Hit
TGGCCTGGGGAAGGAGTTGACCAGCCAACCGACTCTGCATTCATCT390.10564524867266226No Hit
CAACCAGGTGCACTTTTAGGAGATGACCAAATTTACAATGTTATCG380.10293639614259399No Hit
GCTTTAGGGAAGTGCATTGAATCCCCTGGATTGGGTTCAATATATA380.10293639614259399No Hit
ACACGAGGGGGGAGCTGCACTGGAGCTGCCACGGTTCTTGGTCCCT380.10293639614259399No Hit
TTGCACGGGGGACTCATAAATAGGGGGTCTCCACAGTGCCCTCTGC380.10293639614259399No Hit
TTCTCCGGGAGGAGGAAGCTGGAACTTACCACTGTGAGAGGACAGA380.10293639614259399No Hit
TAATCGCGGGGACCGCATCCTGAAGAACGCGGGTGTGGGCTTTTCC380.10293639614259399No Hit
CACACAGGGACTTTGTTAAGGCAAGAACTGACCACCACCCTTGCTT380.10293639614259399No Hit
GTTCAGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC380.10293639614259399No Hit
GTTACTGGGATGAATTAAGTATGTGCCTGTGAAACTGGTGTGTGGT380.10293639614259399No Hit
CATTGTGGGATTTTGACCCAGTTCTTTTGCTCCTTAGGCAAGCAAG370.10022754361252574No Hit
TTATCTGGGGGGGTTAGGGATACATTTCCAAGAAAGAAAAATATGT370.10022754361252574No Hit
ATACGCGGGATGTTAAAAAGCAATTTAAGATGAAAAAACTAGCTTT370.10022754361252574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)