FastQCFastQC Report
Thu 19 Jan 2023
SRR5843208.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843208.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72944
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTTGG200.001248049440.02
ATCCTAG200.001248049440.040
AACGTAG200.001248049440.01
CCGGGGC304.8049933E-640.05
CCGGGAC200.001248049440.05
TCCGCTG200.001248049440.029
TCCGCCC451.1878001E-940.035
ATTAGCG200.001248049440.01
AAGAGGC257.722962E-540.015
TACCACG200.001248049440.01
ACGTTCG200.001248049440.027
TTAGCGG200.001248049440.02
TTTGTGG200.001248049440.02
TATGGGC200.001248049440.04
GAACTGG257.722962E-540.02
GTCTCCA200.001248049440.016
CGCGCTT200.001248049440.022
TAAACGG200.001248049440.02
TCGGGAT304.8049933E-640.05
TCGGGAC257.722962E-540.05
Produced by FastQC (version 0.11.5)