FastQCFastQC Report
Sat 31 Dec 2022
SRR5843206.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843206.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28847
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGATTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT460.15946198911498596No Hit
GCTGTTCTGATAATGTGAAGTCAGATGAGGGTTCCCAGGTTATGTG430.14906229417270428No Hit
CAATTCGGGGCCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGT430.14906229417270428No Hit
GAACTAGGGGTCCTTGGCCCATGTTCATCTCTTGCCCAAGCCCTCA410.14212916421118316No Hit
AAGCTAGGGGTTGGGACCCAAGGGCAGAGGGAGTTTGGTTCAAGAT400.1386625992304226No Hit
GCGCCAGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC400.1386625992304226No Hit
AGAACCGGGATGAAAAGCAAGCCGGGGGCCGCCATGGTGGAAATGG400.1386625992304226No Hit
TCACCCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT390.135196034249662No Hit
TGACCAGGGGTCAGGGAAAGAGGAAATATGCATTTCTTCTCTTAAT390.135196034249662No Hit
ATCTGTGGGGTATGGAAAGGTCATGCAGCTGGAAAAGCACAGAGGG380.13172946926890144No Hit
ATGGTTGGGGGCACAGGGCCCGGTGGAGCTGGGAATGTCCCGGGCG380.13172946926890144No Hit
TAACCTGGGGAACAACCGCCGCATACGGCCGATTGTCGCAGCCCGG370.12826290428814088No Hit
TCAATTAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC370.12826290428814088No Hit
TAAGCTGGGGGGGATCATGGGGCTTCTGACCATTCTGAAGAAGATG370.12826290428814088No Hit
CTGCGCGGGGCCCGGGCATCGCCCCTCGTTTATGAACTAGCCTATC370.12826290428814088No Hit
ATGCTGGCAGCTCCACGCTCCTCTGCATTGCCGAGTCCAGAAGCCC360.12479633930738032No Hit
ATTTGAGGGGAGCAAATGGCTGCTCTTCGCATGCTGTGGATGGGTT360.12479633930738032No Hit
ACTTCCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA360.12479633930738032No Hit
TTAATAGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT350.12132977432661976No Hit
ATTAAAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG350.12132977432661976No Hit
TTCTCTGGGGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCAGT350.12132977432661976No Hit
TCACCCTGCTGCATTGTGACAAGCACCTATGGCTGGACAGCCAACA350.12132977432661976No Hit
TGACCTGGGATAGACGGCAGCATGTAACCTCTGAATCCTCCCGCTC350.12132977432661976No Hit
TCCACTGGGATGCCTCTGGGGGGCGGGGTTAAGTTCTGCCCGGTTT350.12132977432661976No Hit
TTTGTGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTT350.12132977432661976No Hit
GTCCTAGGGTATTTGCAAGTTGAGATAATTTGACTTTTTGGTTTTT340.1178632093458592No Hit
ATAGCCGGGGGAACCGCTGTGGCTCAGAGTCCCTCGGCTAGCTGCA340.1178632093458592No Hit
ACTCTTGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT340.1178632093458592No Hit
TACCATGGGGCAGATGAGACCTGATAACTCAAAGCCTCCTGTGTAT340.1178632093458592No Hit
TGTTGCGGGCCCGGGCGGCGCGAACGGCCCAGCCATGTCCGCAGCC340.1178632093458592No Hit
TGTTCAGGGTGGGCAACACCAAGTCCGAATGCAGATCCTCATGATC330.11439664436509864No Hit
TATTCCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC330.11439664436509864No Hit
TCGAAGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC330.11439664436509864No Hit
GCTATGGGAGCTGAGTGGCTACATCCTGACAAGGTTTGATGTGCCC330.11439664436509864No Hit
AGCCTAGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG330.11439664436509864No Hit
ATTAAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA330.11439664436509864No Hit
ATTCGCGGGGAGCAGCCCGGCGGGGCCAGGCCGCGCGAACATGGCG320.11093007938433808No Hit
TTGCCTGGGAGGAGTCATTATGGCGGCCCGCATTGGCTCCATGGCA320.11093007938433808No Hit
TTGCCAGGGGGGGCTCGGGTGCGGTGCGGGCGCTGCCGGGGCTTCT320.11093007938433808No Hit
TCCTCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC320.11093007938433808No Hit
AAGACAGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCG320.11093007938433808No Hit
GATTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTGC320.11093007938433808No Hit
TATCTTGGGACACCAACATCGTTACGCTTACACACCGGACGCTTGG320.11093007938433808No Hit
ACTATAGGGGATCCCCGAAGGGGCTAAGATCGCCCAAAATGTCATC320.11093007938433808No Hit
TTTCGCGGGACCTTCACAACTGGAATATGACGGAAAGCTGGACAAA320.11093007938433808No Hit
ACATGAGCCCACTGGTGGCTGCCCGCATGCGGCACATCCCACTGTT320.11093007938433808No Hit
CAACAGGGGAAACAAAAACTTTCCATGACAGTAGCATACTGACAAG320.11093007938433808No Hit
TTCATTGGGTACCCTGGATACCCCGATGAACAGGAAATCAATGCCT310.10746351440357749No Hit
ATTCATGGGGATCTGTTGCGGGGGGAATTCAGATGCCTGGATAGGT310.10746351440357749No Hit
TTAACTGGGAGGAGTCAAATACATTCTCTTTGATGCACAAAACCAA310.10746351440357749No Hit
TACACTGGGGGCACCCCGACTGGTTAAAACTATTCGTCCCTTTTCG310.10746351440357749No Hit
TGACTAGGGCATTTCTCCTTCTCCTAGCATCATCAATAGTAGAAGC310.10746351440357749No Hit
GTGTAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.10746351440357749No Hit
TGCCCAGGGACCTTGAGTAAAATCACAAATATCCCATGTACAACAC310.10746351440357749No Hit
CTTATTGGGGCTCTCTCCTCGCCAGGTGATGGTGGTCCCAGTGGGA310.10746351440357749No Hit
TATCTAGGGAGCCTAAAACAGTAGGAAACTGAGTTTTATATGCTTC310.10746351440357749No Hit
TCCAAAGGGGGGGTTGCGGTAGAACATGGCGCAGGGACAACGCAAG310.10746351440357749No Hit
ACACTTGGGTGTGCCTGCGGTTTGCAGACATGGAGTGCAAGCTCGG310.10746351440357749No Hit
GAAAAAGGGGGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGCA310.10746351440357749No Hit
GCAGCCGGGGGAGGGCCCGCTATCCACAGGAACCTTTCACAACAGC310.10746351440357749No Hit
TATCATGGGGTGATCCAGAGCAAAGGAATCAAATTTGAGATCTTCC310.10746351440357749No Hit
GCGTTAGGGGGCGCGTGAAGGTGCGGATTCCGGGCTTCCGGGTGGG300.10399694942281693No Hit
ATTCATGGGGCTCTTCCGATCTGTCTGCGGGCTCCTTCTGCCCAGT300.10399694942281693No Hit
GAATTTGGGTAATCAGAGTGCGGCTGAGCTGCCGGACAGCCAACCC300.10399694942281693No Hit
GAAACGGGGGGTGCACCCCGTGGGTCATGGTGCTGGGTCGCGGGTC300.10399694942281693No Hit
TTGTCAGGGGGGAATTCACTGTCCTTTCATCCATAAGCGGAGAAAG300.10399694942281693No Hit
TTTAGAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA300.10399694942281693No Hit
CTCCAGCCCCACAACATTATATGTTATCCCTCCTAATTCTGTAACA300.10399694942281693No Hit
ACCGATGGGGGGTAGGAGGGGCTGAGGAAAGGAAACCTCGTGCTCC300.10399694942281693No Hit
CAGACGGGACCAAACATAGTCTGCTTACACGTGACACGGTTGCATC300.10399694942281693No Hit
GCGATTGGGCAGCTGGTGCCCTACAAATGGGAGACAAAGACCTGCA300.10399694942281693No Hit
AAACCAGGGATCTCAGAAAACCCTGAGCGAGCCGCTCTGTACTTTG300.10399694942281693No Hit
CAAAATGGGAGGAGAGCAGAACGGAAAGGTTCTCAGGTAGAGAGCA300.10399694942281693No Hit
GCTCAAGGGGGGGTCTGGGGCGGAGCGCCCCACCAACACCTCGCCC300.10399694942281693No Hit
TTATAAGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT300.10399694942281693No Hit
CTTAAAGGGACCTATGAGGAGACCAACAGCACCATCTTGTATGCAC290.10053038444205635No Hit
AATCTAGGGGCACTGCGCAGAGTGGAGGTCGTTGGAGTCACTCGTC290.10053038444205635No Hit
GCAAAAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT290.10053038444205635No Hit
CCCTGTGGAAATTCGAGACCAGCAAATACTATGTGACCATCATTGA290.10053038444205635No Hit
CAAACAGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA290.10053038444205635No Hit
TCAGGCCAGGCTTTTGAGCTGATTCTCAGCCCTCGGTCAAAAGAAT290.10053038444205635No Hit
CAATAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTC290.10053038444205635No Hit
CAAGTCGGGCATCTCCTGAAGACCAGGATGTGCTTCCTTCTCAAAG290.10053038444205635No Hit
TTTACCAGGGGGCTTTTCTTGAGGCCTTTGCTGCCAGTGTTCTGGA290.10053038444205635No Hit
TTGCTTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA290.10053038444205635No Hit
TGTCTGGGGATAGCGGTGCTGTGGATAGGTTCCAGACACTGAAGTG290.10053038444205635No Hit
ATTATGGGGGCTTCTTCTTCTTCGGGAGAACACCAAATGGCGGATG290.10053038444205635No Hit
ACACCCGGGCACTGTAACCTGCTGACCAATTCCAGTCTGGTCCATG290.10053038444205635No Hit
AGCAGGGACGACGCCTTCCGATCTTCTAATGGGTCCTTTCAGCGGC290.10053038444205635No Hit
TACAGGGGGCTCGAGAGCCGGATACTGTCGTCCTGCGGCCGTGCCG290.10053038444205635No Hit
CTCTAGGGAGCGGCGCGCGGCTGCAAGATGGCGGTGCAGATTTCCA290.10053038444205635No Hit
AGAGTGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCG290.10053038444205635No Hit
TTCATAGGGGCACGCGCAGCGACAAAAATGGAGGCTGCGGCCGAGC290.10053038444205635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)