FastQCFastQC Report
Sat 31 Dec 2022
SRR5843202.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843202.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48460
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTTAGGGATACATATTTACAGTTACACTATGCACACCACATACA750.15476681799422204No Hit
AAATGCGGGGCCATAGGAATCACAACTTCCCACATCAGGCCATGCT660.1361947998349154No Hit
TTTCCTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT600.12381345439537762No Hit
ATATACGGGGTCTGACCAAGTACAGCCCCAGCTGCCCTTGTCCCAC590.12174989682212133No Hit
TCCGTTGGGAATCCCTTGGCACCCACTGACCCGGTTGCTGTCTCCA590.12174989682212133No Hit
TTGTGTAGGGGGTGGTGTACTTTTTTGTATGTGGAATTTGTCCCAT580.11968633924886504No Hit
CATCAGGGGCTTCTGCAGTGTCATGCCTCTGGCCGCTGTTGGCTAT580.11968633924886504No Hit
ACTGCAGGGATCTTAGAGAGAGTGATCTTTCAGCAGACTGATCGAA570.11762278167560875No Hit
GGCTGGGGGGCTGACAAAAAGCTCAGAAATTACCTTTTTACAAAAG570.11762278167560875No Hit
CGTTTGGGGGCTCTGTGTAACACAGATTCTCCCCTGCGCTATGTGG560.11555922410235245No Hit
TGACGAGGGAGGCTTAGGCACCACGAAACTGCTGCGTTTCTTCACG560.11555922410235245No Hit
GTTTTAGGGGGCAGTGTCCCGTCTCAGTGCTTCTAGTTCCAGCTCA550.11349566652909615No Hit
TCGTTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT540.11143210895583985No Hit
TCAAATGGGAAGGATGTCCCCTGGAAACAGAGGATGGGCATCAGAG540.11143210895583985No Hit
GTTTAGGGGTAGGTGATAGCAATGAATATTTGCCTAACCAGGGGAA540.11143210895583985No Hit
CCAACCGGGAGAAAAGGCTGTGGTGTCGCAGCGCCTCACAGAGTCT540.11143210895583985No Hit
TTTACTGGGTCAGGTCTAGTAATATGATTTCACTATAATTCAATTA540.11143210895583985No Hit
TATCAAGGGACTACCAGCTCTTCCTAGACTCCCTGAGAGACCCAAA530.10936855138258357No Hit
ACTGCTGGGAAGGCTATTGGACGTGAGGAACTCTTCTTGCATATTC530.10936855138258357No Hit
ATTTAAGGGGGCCACAGCAGGTGCTTATATTGCTTCCCAGACGGTG530.10936855138258357No Hit
TAACCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC520.10730499380932727No Hit
TAATACGGGACCCACGCCAGCTGACCAAGCGAGTCTATTGCACAGC520.10730499380932727No Hit
TATCCCGGGGAACACACAGAACGGAGACTATGCCTAGTGTAGGTTT520.10730499380932727No Hit
TTCGGTGGGGTCTCATATACGTCTGATGACCTCGTATCATGTTATA520.10730499380932727No Hit
GGTTCAGGGGAAGACGCGCCTGCGCAGAAGTGACAGCACGAGCGGG510.10524143623607098No Hit
TAAACAGGGAGTACTGTCATCTTTGAATCCTGAGATAGCAAACAGG510.10524143623607098No Hit
CATGCTGGGATTGGGGTATCCAGGACTGTGGTGGGCGTACTGGGTT510.10524143623607098No Hit
CTCAACGGATATAAGGGGCCGGCTGGAGCTGCTGCTGAAGGAGTTG500.10317787866281469No Hit
CCGTGCCCAGAAGACATGTCAGCTTCTCTGTCCACTTTGGTTGGTT500.10317787866281469No Hit
ATACCAGGTATCCCAGGAGCAGGAATTGCGGGCTGTAGTAGAGAGC500.10317787866281469No Hit
CCACAGAGGAACCTAAGGGAAAGGAAGGGTTGCTGAGTTTGGTCAT500.10317787866281469No Hit
TAGCATTGGGCGATCTTTGCACGGGATTTGTATGTATTTTTAACAT500.10317787866281469No Hit
TCTTCAGGGGATTCCTGACAGTCTTTGGCTGAGGGGTGATGTGTGT500.10317787866281469No Hit
TCGCGGGGCTAATGAACGGGAATCTCACAGGAGGTGGAGGGTCAGA490.1011143210895584No Hit
TCTCCTGGGAAGGAAAGGGAGACGGAGAAGATTGCCATCGTGCAGA490.1011143210895584No Hit
GGATTTGGGCGATCTTTCGGCGGGTGCCTCGTCATGCGACTGTTCC490.1011143210895584No Hit
TTGTCCGGGCATTTGTGAAGACCAAGGGGCCTTGTCGTTCTTTTTC490.1011143210895584No Hit
TTCAGCTGGGAAGGAAAAACTAAGACAGCTTGAAGAAGAGAAAAGA490.1011143210895584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)