FastQCFastQC Report
Sat 31 Dec 2022
SRR5843201.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843201.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46444
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCCCGGGGAACACACAGAACGGAGACTATGCCTAGTGTAGGTTT660.14210662302988544No Hit
TTCAGCTGGGAAGGAAAAACTAAGACAGCTTGAAGAAGAGAAAAGA600.12918783911807769No Hit
ACGCAGGGACGCTCTTCCGATCTGCTCATGGGGGGGTGCAGTCGTC590.1270347084661097No Hit
TGCTTAGGGATACATATTTACAGTTACACTATGCACACCACATACA580.12488157781414175No Hit
AAATGCGGGGCCATAGGAATCACAACTTCCCACATCAGGCCATGCT570.12272844716217379No Hit
TTTCCTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT550.11842218585823788No Hit
TTTGCGGGGATGCTAGGGGCGGAGCTTGCGGAGTAAGATGGCGGCC550.11842218585823788No Hit
CAACATGGGGTCTCTATGGGGATCCCTGCTGTGCCACAGGCTGTGC540.11626905520626993No Hit
ATATGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA540.11626905520626993No Hit
GGCTGGGGGGCTGACAAAAAGCTCAGAAATTACCTTTTTACAAAAG540.11626905520626993No Hit
TTGTGTAGGGGGTGGTGTACTTTTTTGTATGTGGAATTTGTCCCAT530.11411592455430196No Hit
GTTTAGGGGTAGGTGATAGCAATGAATATTTGCCTAACCAGGGGAA530.11411592455430196No Hit
CCTTCAGGGGATATTGTGAGTAATATAGATTGGCGCTAGTAGATCA520.111962793902334No Hit
ATTAAAGGGACAATCAATTGCTTAGAATCTTCATTTCAAATTGTTT520.111962793902334No Hit
TCTCCTGGGAAGGAAAGGGAGACGGAGAAGATTGCCATCGTGCAGA510.10980966325036604No Hit
TGTTCCGGGATGAGGAGGGGGATGCTGAAGAAGCGATGGTGGACAA510.10980966325036604No Hit
TATCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.10980966325036604No Hit
CCAACCGGGAGAAAAGGCTGTGGTGTCGCAGCGCCTCACAGAGTCT510.10980966325036604No Hit
CTCATGTCGGGATGTACAGAACACGTAGTATACATTTAACCCAGTG500.10765653259839807No Hit
AACATAGGGATCGCCATGGCAACTGTCACTGCCCTGCGTCGTACTG500.10765653259839807No Hit
CAACACGGGGATCTCACCAAGGGGGGAATTCTCCAGATTACTTCCA490.10550340194643011No Hit
CAAGCCGGGGAGCTCCACCAGGGCCCGCTATCCACAGGAACCTTTC490.10550340194643011No Hit
ATCGCAGGGAGGCCTGCCTCCCTCCCCACCACCTCCCACATCATCA490.10550340194643011No Hit
GCCATAGGGACTCTCACTGGATATGGTAAACCTTTTAGAGGCAGGA480.10335027129446214No Hit
CATCAGGGGCTTCTGCAGTGTCATGCCTCTGGCCGCTGTTGGCTAT480.10335027129446214No Hit
TCGTTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT480.10335027129446214No Hit
GGTTCAGGGGAAGACGCGCCTGCGCAGAAGTGACAGCACGAGCGGG480.10335027129446214No Hit
CAGCTTGGGGTACACCCAGATTCGTAACCGGGCTCTTATCCAATAC480.10335027129446214No Hit
TAAACAGGGAGTACTGTCATCTTTGAATCCTGAGATAGCAAACAGG480.10335027129446214No Hit
ACTTACGGGCTCTTTTCCGGTCGGCGTGTTTCTGGATCGGAGCGTC480.10335027129446214No Hit
TCTTCAGGGGATTCCTGACAGTCTTTGGCTGAGGGGTGATGTGTGT480.10335027129446214No Hit
GTTGCTGGGGTGGGTGCTGTGGTCGCCTTTGCCATCCTGATTGCCA470.10119714064249419No Hit
TCCAGTGGGGTTTGAAGAAAAGATCACACAGAGCTCCCTGACCATC470.10119714064249419No Hit
ATACCAGGTATCCCAGGAGCAGGAATTGCGGGCTGTAGTAGAGAGC470.10119714064249419No Hit
ACGTGCGGGGTTAACTCAGATTTTGCACTGGTAAAATTTGACTTTG470.10119714064249419No Hit
GCTCACGGGGATTCTTTGGGCACCCAGAAGTTTATATTCTTATCCT470.10119714064249419No Hit
CATCAAGGGACCGACGGCAGGGGAAGTTTGAAGCTGCAGAGACATT470.10119714064249419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)