FastQCFastQC Report
Sat 31 Dec 2022
SRR5843200.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843200.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53597
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGGGGTGCAGATGCTGTGTCATACTCTGACAGCAGCTGCTTAG760.141798981286266No Hit
ATGGTCCGGGGGCTAATATATATGTCACTCTAATTAGGCAAAGGGA710.13247010093848535No Hit
TAGAAAGGGATTGCATGCACGCTGGCACATATGTGCTGAAAAGCAT670.12500699666026086No Hit
CAACCAGGGCCGCACAGTGTCCAGCAGCAATTTGTTCTTTAAGGGG640.11940966845159244No Hit
ATTGCTGGGGATACTCTCCTGGATGGATATGAGACAGCCCGCTATG640.11940966845159244No Hit
GTCATAGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA630.1175438923820363No Hit
ATTAATGGGATGATCATCGACAAGCTGGAGGAAGATATCAACAGCT610.11381234024292405No Hit
CACGCAGGGGAGATTATTGGTTTTCTTGACCAGACCTTGTACAGAT610.11381234024292405No Hit
GACACCGGATAGGATTTTAAGTGAAAGCTTTTCTTCCTGGTTTGCT600.1119465641733679No Hit
GTACGCGGGACTACTGTGGGTGTTGCTTATGCGGCCAAAAATGTGG600.1119465641733679No Hit
ATAATCGGGGGGAATGTCTCACTGCAGGTTCCATGGCACGAAGCAC600.1119465641733679No Hit
GACTAGGGGATCACAGTCCCACCTGAAGGTCCTCTGCCTTCCAGTT580.10821501203425565No Hit
CAAACTGGGATGGAAAACGATGGCGCTTTGCCCTTCACACCACACA580.10821501203425565No Hit
TACACTGGGATGTTTGTGATGGGTGTGAACCACGAGAAATATGACA580.10821501203425565No Hit
ATTGCGGGGGATGCGCCGGAAGTGCACTGCGGCGAACGCGAGGAAG570.10634923596469952No Hit
GCAACAGGGATTCCCACAGACCCCAGCCCAGGGCCATGACACAGTG570.10634923596469952No Hit
GCAGCTGGGAGTGACAGGGGCTGGGACAGGCTTCCTTGCTACCCCA570.10634923596469952No Hit
TTGCTAGGGGAAAGCAGGTGGGCGCCAGGCCCCGGTGCCGGCGAGG570.10634923596469952No Hit
GTAGGTGGGGGAAGTCTGGGATCTAGCGCTTCGGCTCGGGACCCGC570.10634923596469952No Hit
GCATTCGGGTATGCCACAACTAGATACATCAACATGATTTATCACA550.10261768382558724No Hit
TCCAGGGACCTACTTGCTGGGGCTTCACGGTGGTGCACGAGACAGA550.10261768382558724No Hit
GATCTTGGGCACCGAACCTCCATAAACAAGATGGCTATAGCTGCAA550.10261768382558724No Hit
CCATTTGGGATCATCTTAAGTATTGTAAGCTGCTGTGTATGGATCT550.10261768382558724No Hit
ACATACGGGCTTCTAGATGGACTGAGCAGGTGCCAGGCATCTGCTG540.10075190775603111No Hit
GCAGTAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC540.10075190775603111No Hit
CACGATGGGGCACATGGGTCAGCCCAGTTGCCCAAATAATTCAGAT540.10075190775603111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)