FastQCFastQC Report
Sat 31 Dec 2022
SRR5843199.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843199.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50388
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGTCCGGGGGCTAATATATATGTCACTCTAATTAGGCAAAGGGA760.1508295625942685No Hit
TCCAGGGACCTACTTGCTGGGGCTTCACGGTGGTGCACGAGACAGA680.1349527665317139No Hit
GTCATAGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA650.12899896800825594No Hit
CAAACTGGGATGGAAAACGATGGCGCTTTGCCCTTCACACCACACA600.11907597046915933No Hit
CAAAGGGGTGCAGATGCTGTGTCATACTCTGACAGCAGCTGCTTAG600.11907597046915933No Hit
ATAATCGGGGGGAATGTCTCACTGCAGGTTCCATGGCACGAAGCAC590.11709137096134No Hit
GACACCGGATAGGATTTTAAGTGAAAGCTTTTCTTCCTGGTTTGCT560.11113757243788203No Hit
TAATTAGGGACAAACTAGTGTCTGCAGCTGTGGCAGCAGGAGTGAC560.11113757243788203No Hit
CGTTATGGGGCTGGAGATATGTGTGGCCGCCAAATGTCACCATCTC560.11113757243788203No Hit
CTGATAGGGGCAGTACAAGCTGTCATGGCGGCCCGACTGTTAAGCT560.11113757243788203No Hit
CGAACCGGGCGATCTAATTTAGGGGAATACCAGAAGTAAACACAGC550.10915297293006272No Hit
TCATAGGGGCAGACTACAGACCCATCACGGCAGCTGGAGGGTGGTA540.10716837342224339No Hit
GCAGCTGGGAGTGACAGGGGCTGGGACAGGCTTCCTTGCTACCCCA540.10716837342224339No Hit
CGCTTGGGACATTAAGAAAATTGGCTACAACCCTGACACAGTAGCA530.10518377391442407No Hit
CAACACGGGAGGCAATGGTTGTTCTCTTTAAAGAGGGAAGGGGTTT530.10518377391442407No Hit
TTCCCTGGGGGATGTGGAGCTTGCTGACCGCACCCTGTCTGTTGCG530.10518377391442407No Hit
TACCCAGGTGTGGAAGCTCAGCTCCTGCGATATGTGCGAGCTGGCC530.10518377391442407No Hit
TGCGCTTGGGATGAGCAATAATGTCTATTGGCTTTCTAGGCTTTAT520.10319917440660474No Hit
TTACGAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT520.10319917440660474No Hit
CTTGAGGGGGTCCCTGGTCTTCTTGCCATCAGTAGGAGTCAAATAC520.10319917440660474No Hit
ATACATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC520.10319917440660474No Hit
TACACTGGGATGTTTGTGATGGGTGTGAACCACGAGAAATATGACA520.10319917440660474No Hit
GACTGGGGCTCTGGTGTGGTGAGCATCTGCTACAGGCTCCTCCCTG520.10319917440660474No Hit
CGATAAGGGACCAAAGAAGGACTGGAACTTCCAGAAGATGAAGAGG510.10121457489878542No Hit
TTGCTAGGGGAAAGCAGGTGGGCGCCAGGCCCCGGTGCCGGCGAGG510.10121457489878542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)