FastQCFastQC Report
Sat 31 Dec 2022
SRR5843188.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843188.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35724
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGCAGGGGGCATGGCCTTCCGTGTCCCCACTGCCAACGTGTCAG590.16515507781883326No Hit
CGTCTAGGGGTCTTATGTGAAATTTCACTGTAGAAATGTTTTTAAT550.1539581233904378No Hit
TAATTAGGGGCCAGCCCCGACCGACGGACGAGACTGACCCGGACTT530.14835964617624006No Hit
ATCCATGGGAGGTGCCCGCGCTCGTGCTGAGGCTGAGCAAATGGCC520.1455604075691412No Hit
GCAAAAGGGATACCTAACCAAGACAACACAGAGGACAAACAAGTTA520.1455604075691412No Hit
TGTAACGGGAGAAGAGGGGGTGATGTCCCCTCCCCAGATGCCTTGG500.13996193035494345No Hit
TTTCACGGGGTGGCTCAAACCCAGACCAAGACAGTAAGGGTCAGGG470.13156421453364683No Hit
TATTCTGGGGTTCGATAGACTCACTGATTTACTGGAAGACACTTTT470.13156421453364683No Hit
AAACCAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG450.1259657373194491No Hit
AATTGCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT450.1259657373194491No Hit
TACTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.1259657373194491No Hit
AGTTGAGGGCAATGGAAGGCACTGATATACCTGCTCCAGAAATGTT450.1259657373194491No Hit
CTTGTGTGGGGAGACACATTAAGGTGGCAAATGATCTACTTTTTCA440.12316649871235025No Hit
TATCTGGGACCATGGTCCATGCTGCCTGACGTTATCGATGACTTCC440.12316649871235025No Hit
GACAGTGGGACTAGCCAGTTGGCTTCTCAGCATCTCTGGCCTTTTC430.12036726010525138No Hit
GGGCCTGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA430.12036726010525138No Hit
GCACGTGGGGGCTGTTTGCCCTCTGTAGGTGGCACAGAACAGGGGA430.12036726010525138No Hit
CATACAGGGATGTACCACAGGTGCCTTAACTATGTTCTGGAGGAGC430.12036726010525138No Hit
ATTATTGGGGTGTTTCCAGTAGAGAACAGGATAGGAAACTATTGCC410.11476878289105362No Hit
CCAGACTTGGCTCACAGCTCTTTGTTGGTGTGTAACTGTCTCTGTA410.11476878289105362No Hit
TTAAGCGGGATCTGGCTACGGGCCACACTCCTATTGTACAAAAAGG410.11476878289105362No Hit
ATTCCCGGGGCAAATCAAGAGGGTCAAACCTTCGTGTTCACTTTAA410.11476878289105362No Hit
TGTTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.11196954428395475No Hit
ACTTCGGGGGTAAGCAAGCTGAACATTTTGAAACTGGCTCCTGGTG400.11196954428395475No Hit
CTGCATGGGGATAAGAATTGGGGGAAAATGCATCCATAGCCAGGCC390.10917030567685589No Hit
TACGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10917030567685589No Hit
GGGCTAGGGATAAATATTCATAATGTTTGAAGGTGATTTCACTGTG390.10917030567685589No Hit
AGATTAGGGAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGGTGAG390.10917030567685589No Hit
CAAAGAGGGGCAGCTGAGGATGCTTTGAGTCCAGAGAATTCACCAG390.10917030567685589No Hit
TACGCTGGGGTCAGATATTCAGCTTAGTAGATAGCTCAGATAGCCT390.10917030567685589No Hit
AACTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.10637106706975702No Hit
CACCAAGGGGCAATGGCAGCCCCTTCTCTTGACTAAGTCACTTCTA370.10357182846265815No Hit
AGCACAGTCTCCAAGCAAAGAAAAAATGTCATCAGCTGTGTCACCG370.10357182846265815No Hit
GCATGGGGTCGAAGCTTGGTCCCCCACCCCCATCCCCCAATGCGCC370.10357182846265815No Hit
ATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT370.10357182846265815No Hit
ATTCGGGGGGAAGTGCTAGACACCTGTGTCCAGTGGGATTTTTGCT370.10357182846265815No Hit
GGGATGGGATGATTGTACTTTTGATTAAATTTTCATAAGTTGTTTT370.10357182846265815No Hit
CTAGTTGGGACCCAGTTGCCATGGAGAAGAAATCAGGAGCCCGTAT370.10357182846265815No Hit
AACTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.10357182846265815No Hit
TTATAGGGGCCAGCCTGACAGTGTGGCTTGTGTGATGCACACACAG360.10077258985555929No Hit
CGCGATGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC360.10077258985555929No Hit
AACACAGGGATATCATCTTTCTCAATGCTAAACATCTTGGGCTGGC360.10077258985555929No Hit
ATTAGGGGACTGACCAAGATCAACAATTTCGCCTCTGAGTGAATGC360.10077258985555929No Hit
CATGCAGGACATCAGAGCCCGAGTACAGTCTACCTGGACTACATGG360.10077258985555929No Hit
TTAACTGGGACTGTCCCTCTTGTCTTCTAAGACGGTAGGTCCAGCC360.10077258985555929No Hit
GCTTAAGGGATCAGCTCGTGGGTGTCTGGAAGAGAAAGAGACAGAA360.10077258985555929No Hit
ATTACCGGGATGAATGATGGATTTGGGACTAGAGAGGGAACAGTAA360.10077258985555929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)