FastQCFastQC Report
Sat 31 Dec 2022
SRR5843187.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843187.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33273
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAATTAGGGGCCAGCCCCGACCGACGGACGAGACTGACCCGGACTT560.16830463138280288No Hit
TGTAACGGGAGAAGAGGGGGTGATGTCCCCTCCCCAGATGCCTTGG510.15327743215219547No Hit
AATGCAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT480.14426111261383104No Hit
ATACTCGGGAATAATGGAAATTCGAGTCTTCCCAGATAAAGGATAC460.13825023292158808No Hit
TTTCACGGGGTGGCTCAAACCCAGACCAAGACAGTAAGGGTCAGGG460.13825023292158808No Hit
CCAGCAGGGGGCATGGCCTTCCGTGTCCCCACTGCCAACGTGTCAG450.1352447930754666No Hit
CCAGACTTGGCTCACAGCTCTTTGTTGGTGTGTAACTGTCTCTGTA430.12923391338322363No Hit
GCTTAAGGGATCAGCTCGTGGGTGTCTGGAAGAGAAAGAGACAGAA430.12923391338322363No Hit
AAACCAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG410.12322303369098067No Hit
GCAAAAGGGATACCTAACCAAGACAACACAGAGGACAAACAAGTTA410.12322303369098067No Hit
GCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT400.12021759384485921No Hit
GTTCAAGGGGGTGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.12021759384485921No Hit
TTCCTAGGGGGAGTTCCTCACATACAGACCAACTTAGTGGTGTCTG400.12021759384485921No Hit
CTACGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC390.11721215399873772No Hit
CTTGTGTGGGGAGACACATTAAGGTGGCAAATGATCTACTTTTTCA390.11721215399873772No Hit
GCTCTAGGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC390.11721215399873772No Hit
CACATAGGGATATTCACTCCCTTAGGAATATCCAATCAAAGATACT390.11721215399873772No Hit
TCTATAGGGTCCGATCTTACTGAGGGGAGCTGAGACAGAAGAAAGG390.11721215399873772No Hit
TGAGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.11721215399873772No Hit
CTAAATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC380.11420671415261624No Hit
AATTATGGGCAGAGTTTGAGCCTGCTGAGGGCTGAGGCATGTCTCT380.11420671415261624No Hit
CTCAAAGGGACTGCTGTTTGACTTTCCCCTTGACATTTCTCAGAAA380.11420671415261624No Hit
CGTAGAGGGGGGCTCTGTTTCAATTAGATGCTAGAGCAATTGTCAT380.11420671415261624No Hit
TGTACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.11420671415261624No Hit
TAAGCAGGGATTCTTCAGTCTGCTACACACACCAGGCTTACTGGAA380.11420671415261624No Hit
ATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT370.11120127430649476No Hit
GTCCTTGGGGATGCCGGGACGGAGTTGTAGTTGCTAAGATGACCAA370.11120127430649476No Hit
CGTCACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.11120127430649476No Hit
TTAACTGGGACTGTCCCTCTTGTCTTCTAAGACGGTAGGTCCAGCC370.11120127430649476No Hit
TTCTATGGGAATCAATGACCTGTTTCCCAACTGCTACCAGTTGCCC370.11120127430649476No Hit
ATTACCGGGATGAATGATGGATTTGGGACTAGAGAGGGAACAGTAA370.11120127430649476No Hit
GCTAGCGGGGTTCCTACCCCCAATGTGTCCGTCGTGGATCTGACGT360.10819583446037327No Hit
ATATGGGGGTGTGGCATGACCAGGGACAGTGGAGTGATGTGCCCTG360.10819583446037327No Hit
CCTTGTGGGGCTCCCAGACGGCTGTCCAGCACGCATCCGCCTTCCT360.10819583446037327No Hit
CGACTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC360.10819583446037327No Hit
TTAACAGGGACTCATTCAGTGTGTGTTTTGGGGAGCAGGGGTTAGA360.10819583446037327No Hit
TATTCTGGGGTTCGATAGACTCACTGATTTACTGGAAGACACTTTT360.10819583446037327No Hit
CATATGGGGGGAGTCCCGGGACCAAGATGGCGACCGCTGCTGCTGT360.10819583446037327No Hit
GGCTCAGGGACATCATCAAACTGATTTATATTCCTGTTTATCACTA350.1051903946142518No Hit
CTAGTCGGGGGGGGCATCCAGCTTCCGGGAAGCCATGCGCATTGGA350.1051903946142518No Hit
GTTTGAGGGGTGATTAGAGGTTGGCCAAGTAGGGGAGAGGCAGTCA350.1051903946142518No Hit
AAGCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC350.1051903946142518No Hit
TGTTCAGGGGTCAAGAAGCAGCTTGGTTTCCTTTGCCAGATATCCT350.1051903946142518No Hit
ATTAGGGGACTGACCAAGATCAACAATTTCGCCTCTGAGTGAATGC350.1051903946142518No Hit
TCGACCGGGGTCTGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTT350.1051903946142518No Hit
TCGCCGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC350.1051903946142518No Hit
AACGTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA350.1051903946142518No Hit
GTCACCGGGACTTTTTATATGTGAGCGAGCAAGCGAGCAAGCACAG350.1051903946142518No Hit
GATGAAGGGTTAGAATGGATGACCCAACACCCTTCGACATTCAAGC350.1051903946142518No Hit
CACGCGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA340.1021849547681303No Hit
TGTGCTGGGATTCTGGAAAGACTTCCCACCAAGGCTGGTGACCTGA340.1021849547681303No Hit
GTAGGGGAGTGTTACTTTAATTCTCTGCCAAAGGAATTAGAAGTAA340.1021849547681303No Hit
TATCTGGGACCATGGTCCATGCTGCCTGACGTTATCGATGACTTCC340.1021849547681303No Hit
GCACGTGGGGGCTGTTTGCCCTCTGTAGGTGGCACAGAACAGGGGA340.1021849547681303No Hit
TGGCAAGGGATAGGGAGAATTCGTATGTGCCAACAACTGGAGCAAT340.1021849547681303No Hit
ATTCGGGGGGAAGTGCTAGACACCTGTGTCCAGTGGGATTTTTGCT340.1021849547681303No Hit
ATCTCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.1021849547681303No Hit
GTTACAGGGATCACAGGGGTGTACCACCACCACCTGTCTTGAAAAT340.1021849547681303No Hit
TAAGCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC340.1021849547681303No Hit
CTGCTTGGGGTGCCAGCTCAGAACACTGGTCTAGGACCCGAGAAGA340.1021849547681303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)