FastQCFastQC Report
Sat 31 Dec 2022
SRR5843170.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843170.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63545
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTTAGGGGCAGACGGTATCAACAGGAACATCCTCGTGTTAGATA1000.15736879376819576No Hit
CACTAGGGGAGAACTTGTGAAGCTTGGAAGTTGCAAACTTATTGAA900.14163191439137618No Hit
GACTAGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT820.12904241088992052No Hit
CAAAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC800.12589503501455662No Hit
AATTTAGGGAGTCTGCTTGTGGCCAGCATGCTGGAGCCAGCTGTGG790.12432134707687466No Hit
TGGAATGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC790.12432134707687466No Hit
TACATAGGGGGAGAAGGTGAAGATGGCTGCCGCCCGGGCTGCGGCC780.1227476591391927No Hit
TCTTAGGGGGATCTCGTGTTGGGGGGAATTCACACCGGCGCACGCC780.1227476591391927No Hit
TGCGAGGGGAGAGGCAAGTCTGGTTTTTCCCATCTTGATAGTTTTG770.12117397120151073No Hit
ATGGCTGGGGGCAGTTTGAATCGCGGTCCGACGGAGGAGTGGGCGC760.11960028326382878No Hit
CATAGCGGGAGAGGCTGACAGAGCAGTACAAGGAGCTGCTGCAGTC740.11645290738846487No Hit
TTCCCTGGGGATATAAGCAAGAAGGAGATGCAGCCTACGCATCCAA720.11330553151310097No Hit
ACAACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC700.11015815563773704No Hit
CCTCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC700.11015815563773704No Hit
TTTTACGGGGCTTTGTCTCGGGCCTGAGTTCGTAGGCGCAGCCGGC690.10858446770005507No Hit
CATATGGGGCTCAGACCAAGGCCACCTTCTTGAAGCTGGCAGGCCC690.10858446770005507No Hit
CTGTCAGGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT680.10701077976237312No Hit
TCCCCAGGGGATCGCAGTTCGGCGCGCGCAAGTCGCCGGGAGCTGT680.10701077976237312No Hit
TGATTAGGGACTGAAAACTGCGGCATCTCCCGCAAATCTCCCGCAA680.10701077976237312No Hit
CGTTAAGGGGCAGGGCCTCTGGTTCACTGGAACTAGCTGTATTTGT670.10543709182469117No Hit
TATCCTGGGCGATCTCTCCTCGGGATGACCCACCAAACTCATGCAT670.10543709182469117No Hit
ATACTAGGGGCTGTTTACTTCCTGCGGCTGGAGGAACCTGTGTTGT670.10543709182469117No Hit
TACTGTGGGGCGAGCGGGGTGGCAGGAGGCTGACTCTAATTTCCCA660.10386340388700921No Hit
CTATAAGGGGGCTCCTGACTGGCTACGCGGCAAAGCCAAGGTCAAT660.10386340388700921No Hit
GGCAAGAAGGGAGCTAAGAAGAAAGTGGTCGATCCATTTTCTAAGA660.10386340388700921No Hit
AGAACAGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC660.10386340388700921No Hit
TCCTGTGGGGTCTGAGCAAATGGCTGCTCTTCGCATGCTGTGGATG660.10386340388700921No Hit
TTAGTAGGGGACCCTCTGCTCTCACTTTTCTCCAGAAGATTCCTCC660.10386340388700921No Hit
ACACATGGGGGCAGCGCGCGTGGTCAGCGGCTATGGAGGGCGCAAA650.10228971594932726No Hit
TAACTTGGGGATCTACATGGGGGCATCACGTCTCACTGTCCTGAGT650.10228971594932726No Hit
TAGCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC640.10071602801164528No Hit
TTACCCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT640.10071602801164528No Hit
GTTCCAGAGAAGCTAACTCCACTGGAGCAGTATGAGCAAAAGGTGA640.10071602801164528No Hit
GCGTTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT640.10071602801164528No Hit
ATTACTGGGCTGCTGTATACAAGGCCCTGAGTGACCATCATGTATA640.10071602801164528No Hit
GTGCCAGGACAGGTTCTCTGGACACAGTGATATTGAGCAGCCAGTC640.10071602801164528No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)