FastQCFastQC Report
Sat 31 Dec 2022
SRR5843169.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843169.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60855
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTAGGGGGATCTCGTGTTGGGGGGAATTCACACCGGCGCACGCC940.15446553282392572No Hit
CATATGGGGCTCAGACCAAGGCCACCTTCTTGAAGCTGGCAGGCCC810.13310327828444662No Hit
GACTAGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT790.12981677758606525No Hit
CTTGCAGGGGGTCGTATCGGTGAGGATGGCCCTGGAGACGGTACCA760.12488702653849315No Hit
GTGCCAGGACAGGTTCTCTGGACACAGTGATATTGAGCAGCCAGTC740.12160052584011175No Hit
CATAATGGGGAAGCTGAAGAGTACGTCCCTTTGCCAAAGGGAGATG730.11995727549092103No Hit
AGAACAGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC730.11995727549092103No Hit
GTGTCCGGGGGACAAAATTTCCATCTTGGGAAATGCCCGTCTCCTC720.11831402514173035No Hit
AAAAGAGGGGTTTCCCAACAAAATGGCGACACGTGTCGCCATCGAA710.11667077479253965No Hit
TTCCCTGGGGATATAAGCAAGAAGGAGATGCAGCCTACGCATCCAA700.11502752444334893No Hit
GTGTCTGGGGGGTCATTGGGCCTGCAGCAGCATCTGCCCAGATGCA700.11502752444334893No Hit
GCGGCTGCTCATGCTTGGCTTGGACAACGCTGGCAAAACAACCATC700.11502752444334893No Hit
TAAACCCGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT700.11502752444334893No Hit
TTAAGTGGGACACGCGCTCCCAGCTTGCCGCGGCGCCTGCGCAGTG690.11338427409415826No Hit
TTACCCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT690.11338427409415826No Hit
ACAAAAGGGGAAGAAAAGTTTGGGACTGATGACCAAGAGGCGTCCT690.11338427409415826No Hit
CCATGTGGGGACCCGGAAGCAGCCCTGCAGCGGAGCGGGCAGCAAT680.11174102374496755No Hit
ATTACTGGGCTGCTGTATACAAGGCCCTGAGTGACCATCATGTATA680.11174102374496755No Hit
TAATTAGGGTTCCGCGCGACGATCGCCAAGTTCCATCTTCGCGTGG670.11009777339577684No Hit
GTTAGCGGGGTGTTTGGGAAGCGCTCTGCCCGGCGGACAGGATGGC670.11009777339577684No Hit
TCCTGCAGGATATAAAGAAACCAGACCGTGATGACTGGGAGAGCGG670.11009777339577684No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG670.11009777339577684No Hit
TGGAATGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC670.11009777339577684No Hit
ATTTTAGGGGAGGTGAAGCGCAAGACTGCCAAGCTCCAGGATTTCA660.10845452304658613No Hit
CAAAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC660.10845452304658613No Hit
CTATAAGGGGGCTCCTGACTGGCTACGCGGCAAAGCCAAGGTCAAT650.10681127269739546No Hit
CTGCAAGGGGAGGAGAGCCACTGCTGGCCGTAGGTCCCGTGTGACT650.10681127269739546No Hit
TACCCCGGCAGCCAAATACTATGACATCCCAATTAGTAAACACAAA640.10516802234820474No Hit
GCCCGCAACATCCCGTTCTTCCCGGATCTGCAGATCACGGACCAGG640.10516802234820474No Hit
CTTAAAGGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGC640.10516802234820474No Hit
CAAAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.10516802234820474No Hit
TATCCAGGGCCGCCTACCAACTCTCAGTTTTTTGTAACAGTCCCAC640.10516802234820474No Hit
TCTGCCGGGGGTGCCCTGCAGTTCTTAGCCAAAGGAACATTGGGTC640.10516802234820474No Hit
ACAATAGGGGGCTGGCCAGTTTCTCATGCATGCAGCTTGATGATTG640.10516802234820474No Hit
ATCACTGGGGGACGTCAGGAGCCAAAATGGCGGCGACGGTCGGGGT620.10188152164982336No Hit
AAGTGGGGACCAGCGCAAGAACATATGCCAGTTCCTGATAGAGATT620.10188152164982336No Hit
AGTTTCGGGGACAGCCGGGTGAAGCCCATCCGGGCAAGCCTTCCCT620.10188152164982336No Hit
AACGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC610.10023827130063265No Hit
TAGCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC610.10023827130063265No Hit
GTATCTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCT610.10023827130063265No Hit
CAGACAGGGGGCCCTAATGATGATGGGGAGATGTTCATGCGGCCAG610.10023827130063265No Hit
CCCACCAGAGGCTGATCCCCGGCTGATTGAGTCCCTCTCCCAGATG610.10023827130063265No Hit
TTAGTAGGGGACCCTCTGCTCTCACTTTTCTCCAGAAGATTCCTCC610.10023827130063265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)