FastQCFastQC Report
Sat 31 Dec 2022
SRR5843168.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843168.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63475
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATTTGGGGCAATGCTTGCAGTATGTATCCTGATCGTGCGTGCGA1060.16699487987396613No Hit
AGCTTTGGGACTTGGAAAGGCTAAAAATTCTGCGGCAGCGGTGTGG810.12760929499803073No Hit
TGGCATGGGACTTCTTAAAAACGGACAACGTTTTTCTAGCCAGAAG750.11815675462780621No Hit
CGTACAGGGATCGAGTGAAGGTTGTGTCTCTAGAAAGGAAGCTTGT740.11658133123276881No Hit
GCTTGAGGGACTTCCCAAGAAGCGGCCATAGCCCAGATGCGAGGTG740.11658133123276881No Hit
GCGTACGGGAGATGTGATACACGTTTCTGGAAACTGCCTCGTCATG740.11658133123276881No Hit
TGTTCTGGGTATATCCATCTATAACAACTGCGTCAGCATCACTTGT730.11500590783773139No Hit
TGAATAGGGACCTAGTTCAGTGATAGAGAACAAGATGTGTAACTCT730.11500590783773139No Hit
TGTTCGGGGTGGCGAAGGGGGTTCCGGAACTCCGCCGAGAGTAGTC720.11343048444269396No Hit
CATCGGGGGATGCGGAGGAGACAGTCAGGCTCAGCTGCAATTCCTG720.11343048444269396No Hit
CTGCTTGGGATTGCAGGGCAGCTGCTTTCCTAAACACAAGCCTATG720.11343048444269396No Hit
ACAGCCGGGAACAGCACCCTGCAGAGTGAAGTCAAGCCCATCCTGG700.11027963765261914No Hit
CACCTCGGGGTTCCAAATGACCTTCCACCTGTTTATTGCTGCGTTT690.10870421425758173No Hit
TTTCACGGGATGACCAAAACATATGCTCAACTGATGGCTCCCCAGA690.10870421425758173No Hit
GGATCCGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC690.10870421425758173No Hit
TTTTAAGGGGACCCCGGAAAGCTGCCCGGGCGGCCCGTGCTGTGAC680.10712879086254432No Hit
AAGCTTGGGATTGATTAGTAGTCATGCAGGTGAGCCTGAGCCTCCC680.10712879086254432No Hit
ACACACGGGGATTTGAGTGATGACGACCGAGCCAACTTAATGTGGA680.10712879086254432No Hit
ACTCCAAGGGCAGTGAGGGAGAGCTTGCGAAACTGGTCTGCAAGTC680.10712879086254432No Hit
GATAAAGGGGTAAGACAAAGATTCTATAACCTTGTCCAACTCTATG680.10712879086254432No Hit
GGTGCCGGGAACACATTTCAACTAACCACAACAAATGTTACATTTA680.10712879086254432No Hit
TAATCTGGGGGAATGAGCATCCCAGCAGAGTGACAGAGCTCCCTTT680.10712879086254432No Hit
CTCAAGGCGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTA670.10555336746750689No Hit
CTATAAGGGAATAAAAAAAAATGTTTTTTCAAACAAAAGCATTCTC670.10555336746750689No Hit
AAACTCGGGGTTGCTACTTAGGACAAAACCATAAGCAGTCGGGTGA670.10555336746750689No Hit
CCTCTTGTCCTCTCTTTTTCTTTGTCTTCTCTCCCTACCAGATGTG670.10555336746750689No Hit
GCCTATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC670.10555336746750689No Hit
CGTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.10555336746750689No Hit
TCCCGCTTGGTCCGCAGCCTCATGTCTCCCTCCCACTATGGGCCTC660.10397794407246948No Hit
TTCTTTGGGAATATAGATTGGCGCTAGTAGATCACAGAACAACCGC660.10397794407246948No Hit
TATCTAGGGGCTACTTAGGACTTCCAGACTTCACAGTATTGACATT660.10397794407246948No Hit
CAACTGGGGGTTCTTGCCTTGTGAGGAGTCCTCGCCAGCTCCCCAG660.10397794407246948No Hit
CAACATGGGAGAGCGCGGGACGTCTGTCTTCGAGTCCGAACGTTCG660.10397794407246948No Hit
TCCTCTGGGAAAGACTCCCCATGCTCCTTTAGAACTGGAGGTGAAT660.10397794407246948No Hit
CGATCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.10397794407246948No Hit
CTAGCCGGGACCTTAGAAGAGACCCACAACATCTTCCTTTGGTACA650.10240252067743205No Hit
AGTCATGGGATGGGAGAACTGATGACTCTTGAAGGGAGGTGGATGG650.10240252067743205No Hit
AGAAAGGGGAACTCCAACCTAGGAGGAAAGACAGATGAAGCCACAG650.10240252067743205No Hit
CAACTGGGCGATCTAAAAAAGGGGATATCTTTAACAACTACTCCTT650.10240252067743205No Hit
ACTCCAGGGACTCTAAGGACGCTGCCGTGTTAGTTGCCCGGCACTG650.10240252067743205No Hit
CTCTCTGGGAAGCAGATGGAGCAAATCTCTCAGTTCCTGAAAGCTG650.10240252067743205No Hit
TGCACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.10082709728239465No Hit
CTTATTAGGGGATGAGGAGATGATGCAGATCGAGTGTGAGGTCATG640.10082709728239465No Hit
CCACACAGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAG640.10082709728239465No Hit
ATCCATGGGATTCATGTGGGAAATCAAGTAGTGTCAGAACTTGGCC640.10082709728239465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)