FastQCFastQC Report
Sat 31 Dec 2022
SRR5843164.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843164.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76008
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG1840.24207978107567626No Hit
ACTCACGGGGGCTGGAGTTTCGCCGCCGCAGTCTTCGCCACCATGC1140.14998421218819072No Hit
TACTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1000.1315650984106936No Hit
GCTCACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA950.12498684349015893No Hit
TGCTACGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA930.12235554152194505No Hit
CTCAGGGGTCGTGTTAGATATTGAGGCTGCTTCGTGTCGGCACGAA880.11577728660141037No Hit
CCTGGGTGGAGTTGGCTGTTGAGAAAAGGTGGAGGGAGTGGAGTCC860.1131459846331965No Hit
TAGATGGGGCCTTCTTCCGAGCCTCTCCTCTGGCCGCCGCGCGGGA840.11051468266498263No Hit
ATATCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA830.10919903168087569No Hit
ACTAATGGGGTGCTTCAGCAGCCCGAGAGAGTTGCAAGGCTAAGCA820.10788338069676875No Hit
TGATTAGTTTCATATTTCCCAATTGTTTATCTCTTGTTTGGAGTTG810.10656772971266183No Hit
TCAACTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT800.1052520787285549No Hit
GCGTCCGGGTACCAAGGAGCTTGATGGAGAAAGTGGCCATGTTGGT790.10393642774444796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)