FastQCFastQC Report
Sat 31 Dec 2022
SRR5843163.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843163.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72536
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG1670.23023050623138855No Hit
ACTCACGGGGGCTGGAGTTTCGCCGCCGCAGTCTTCGCCACCATGC990.1364839527958531No Hit
ATATCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA930.1282121980809529No Hit
TACTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA930.1282121980809529No Hit
TCAACTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT900.12407632072350282No Hit
GCTCACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA870.11994044336605272No Hit
GCACCTGGGGCCCCACCGGAGGCCTCACTTCTTCTTTCCCAAGTCC860.11856181758023601No Hit
TAGATGGGGCCTTCTTCCGAGCCTCTCCTCTGGCCGCCGCGCGGGA840.11580456600860263No Hit
TGCTACGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA820.11304731443696923No Hit
CACAACGGGGGGCTTCCTCAGCTCTTTTGCTCTCAGACAGAAACAA810.11166868865115254No Hit
GCGTCCGGGTACCAAGGAGCTTGATGGAGAAAGTGGCCATGTTGGT810.11166868865115254No Hit
CTAAATGGGGAAGGTGAAGATGGCTGCCGCCCGGGCTGCGGCCCTG790.10891143707951914No Hit
ACTAGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT740.10201830815043565No Hit
CTCAGGGGTCGTGTTAGATATTGAGGCTGCTTCGTGTCGGCACGAA730.10063968236461895No Hit
CTTCAAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA730.10063968236461895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)