FastQCFastQC Report
Sat 31 Dec 2022
SRR5843162.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843162.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52805
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTTGGGGGGGAAGGGGCAGGGTTTCATTTCCTGGTGTTCCCAT700.13256320424202253No Hit
AGCATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.1306694441814222No Hit
ATCCTAGGGGGATTTACTGGTGGAGGGAAAAGGAGCCGGGAACAAT690.1306694441814222No Hit
CACAACGGGAAGTTCTGGGCAGTGATCATCAAATGGAAATGTTTAT660.12498816399962125No Hit
CGTACGGGGTTCTTGGCATGGTCCTGCCCTACCTCATGGGATGGGC660.12498816399962125No Hit
ATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT650.12309440393902094No Hit
TCTGGCGGGGAGACAAACCCAAATTACCCTGAAGTCCTCTATGAAG640.12120064387842061No Hit
CTTACTGGGGTTCTTTCAAGGGAGAATTAAGTTAAAGCCAGATTGT630.11930688381782029No Hit
CTTTGCGGGCTGCCTCGGGAGGCACAGAGGACATGGCTAAGGATTG620.11741312375721996No Hit
CCTACCGGGAAGGGTCAACCTCTCTGGTTGTCAGATCTTCACATGA620.11741312375721996No Hit
CTTGATGGGATGGAGAGAAGCAAGATGAGTTCAAGCGTCTGGCTGA620.11741312375721996No Hit
GTTAATGGGACACAATTTATCCTCTGTACAGGAAATCCAGGCACAA620.11741312375721996No Hit
GCAGTTGGGAGTTGACCATGTCCATCAATTTGTCACTGGAGAAAAG610.11551936369661965No Hit
TGCGTGAGGGGAGGCGCGGACGCGCGGCGGAGCTCGAGCTGCTGCA600.11362560363601933No Hit
TCGGCCGGGAAGTACAGCCCTGACTGCACCATCATCGTGGTTTCCA600.11362560363601933No Hit
GTAAGAGGGGGCGGGCGCAGAGCTCGGCAAGGCGCTGGGACGGTGG600.11362560363601933No Hit
GGTTGTGGGGGTACTTCTTCGGCGGTGCTCCGGTGCTGACTGATTG600.11362560363601933No Hit
TAGTCCGGGAGGGCGGCGCGTGGTCTACGCCGAGTGACAGAGACGC600.11362560363601933No Hit
TAGCATGGGGGGAGCTGCAGGATCCGTCCGAGATGGCAGAGGTGGA600.11362560363601933No Hit
GGTTTAGGGGGGGATAGGTGCACTGGGAGTGACCACAGAGGTCAGG590.11173184357541899No Hit
GGCCACAGCCAACACAGCCAACACAGAGAACAGCCCGCAGGCCCTC580.10983808351481866No Hit
ATTACCGGGACTCCAGTCTGCTTTTTGTCTCCCTTAAGATTTCCTT580.10983808351481866No Hit
CTCTACGGGGTTTCTCCACAGCTACTTGCAGCAGCTTCTAGTCAGT580.10983808351481866No Hit
AACCGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC580.10983808351481866No Hit
ACCTTTGGGGGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAG570.10794432345421834No Hit
CAAGTAGGGGCCCTCCTTCTAACATCAGGTCTAGTAATATGATTTC570.10794432345421834No Hit
AAAGTAGGGATTTGATACAAGGCAAGGACTTACTCACCGCTTACTA570.10794432345421834No Hit
TGCAAGGGGGGGTTGTGGATGGTGGCAAGCATGGCACCGCCGGTGA560.10605056339361803No Hit
CCCAGGAGAAATGGAGTCCAAAGTGGAACAAGGCGTGAAAAATCTC560.10605056339361803No Hit
TCTTAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA560.10605056339361803No Hit
ACTGCCGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC560.10605056339361803No Hit
GCTACTGGGTTTTCGCAGGGGGTGTCGGGTCCGGAGCGGGGCTGAG560.10605056339361803No Hit
CTCCAACTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATA560.10605056339361803No Hit
CTTCCTGGGAGTTGGGTCTGAGGTGCAGGCGCGAGGGGAGCGGGGT560.10605056339361803No Hit
TGAGCTGGGACTGGAGATCGAGGTGGGGAATTACAGGGAAGAATAC560.10605056339361803No Hit
TTCCCTGGCCATGCCTGTCCCATCAAGTATAGCCCAGAAGAGATCG550.1041568033330177No Hit
GTTTTTGGGGACTCTCTCCAGCTGACAGGCACAAAGCCGGTTGCCA550.1041568033330177No Hit
AAGCTGGGGGATGACCCACCAAACTCATGCATATCACATAGTTAAT550.1041568033330177No Hit
TTCGCCTGGGATGACATGAGTCTGGCAGAAAGTTATGCCCAGTATG550.1041568033330177No Hit
AAATGCGGGAGGCTCAGCATGGCCACCCCAACCCAGAGCCCCACAA550.1041568033330177No Hit
CCCTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.1041568033330177No Hit
TTTAGTGGGAGCTGGGAGGGAGTAGGCGCTACGTCACTTACTGGGT550.1041568033330177No Hit
CGGCCAGGGACTGGAGGGGGACTGCATAGAGTGGACGGCACTCGGG550.1041568033330177No Hit
CTAGTGGGGGGAGGTGCGGCTGACTAACAGGAGTCCCCGAAGTGTG550.1041568033330177No Hit
TCCTTAGGGGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGT540.10226304327241738No Hit
CTCAACAGGGGTGAACCTTTGCCCAGGTTTTTCTTCTTCTCACAAG540.10226304327241738No Hit
CATCTAGGGGCATTTCTGTCGGCTGAGGTGACTAAGATGGAAGCGT540.10226304327241738No Hit
TTTGTAGGACTGGAAATGCCTTCCTGAAGGCCTGGGTGTATCGCCC540.10226304327241738No Hit
TACACAGGGGAGTCCTTCATTTCTCAAACCCTGCCTGCCCTATTGT540.10226304327241738No Hit
ACTAACGGGGAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGAGC540.10226304327241738No Hit
GACGCTGGGGGTGCATCCCATTTCCACCATGATTAAGGGTCTCTAT540.10226304327241738No Hit
TACTAAGGGTGGCAGCACAAAACTGTGGCTGTCCTGGAAGAGGGAA540.10226304327241738No Hit
ATAAAAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG540.10226304327241738No Hit
CTACATGGGGGACGTCAGGAGCCAAAATGGCGGCGACGGTCGGGGT540.10226304327241738No Hit
AGTTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.10226304327241738No Hit
TGCGCGGGGTCTTTAAAGCCAAGAAAGTAGTAATTAAGTAGCCTAG530.10036928321181707No Hit
CAAATGGGGCCCTGACAGTTCCTGAGCTCACCCAGCAGATGTTTGA530.10036928321181707No Hit
TTTCATGGGAGGGGCGTTGAGTCCGTCCGACTTCACTGCCCCCTTT530.10036928321181707No Hit
GCTCCAGGGCTAGCGCCGGGGGGAATTCTGGACATTAATTAGGGCT530.10036928321181707No Hit
TGCCGGGAGGGGCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC530.10036928321181707No Hit
TCATCTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT530.10036928321181707No Hit
GCACAAGGGGTGCCGCGCGGCGCCATGAAGGGCAAGGAGGAAAAGG530.10036928321181707No Hit
ATGACTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT530.10036928321181707No Hit
TCTTAGGGGGTTTGTGTGCAGGTAGGTGTATGCACATATTGGCTCC530.10036928321181707No Hit
CTCCAAGGGGTAGAATATGCTAGCAGCTAAGCACAACAGATGAATC530.10036928321181707No Hit
GTCGCAACGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTT530.10036928321181707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)