FastQCFastQC Report
Sat 31 Dec 2022
SRR5843161.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843161.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49770
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTTGGGAGTTGACCATGTCCATCAATTTGTCACTGGAGAAAAG730.14667470363672896No Hit
CTCAACAGGGGTGAACCTTTGCCCAGGTTTTTCTTCTTCTCACAAG660.13261000602772754No Hit
CCCAGGAGAAATGGAGTCCAAAGTGGAACAAGGCGTGAAAAATCTC660.13261000602772754No Hit
ATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT660.13261000602772754No Hit
CTTGTCGGGAATTCCCACACATGGGAACAGCTGGGGACATTGCAGC640.12859152099658427No Hit
CCGTTTGGGGGGGAAGGGGCAGGGTTTCATTTCCTGGTGTTCCCAT630.12658227848101267No Hit
GCTCCTGGTCTAAAGAAATGTTAGAAGAGAATACAGGAATTTCCCA630.12658227848101267No Hit
AAGCTGGGGGATGACCCACCAAACTCATGCATATCACATAGTTAAT620.12457303596544102No Hit
CTCCAACTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATA620.12457303596544102No Hit
TGGTTAGGGGCAGGCAACGCTGTGGGGATCGGGCTTCCACTCCAGC620.12457303596544102No Hit
ATAAAAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG620.12457303596544102No Hit
GTGGGCGGGCTCATCCAAATCCAGCCAACCTTTACACCAATTCGAG610.12256379344986941No Hit
CGACCTGAGATTCTGCCTGACGGAGACCATGACCTCAAACGTTGCC600.12055455093429776No Hit
GTGGCCAATCTCAAAACTGGACCCCAAGATACTCCTCTGACCCAAA580.1165360659031545No Hit
GTCGCAACGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTT580.1165360659031545No Hit
GCTCAGGGGAATCCCACCATCTACTCTGGTAAAGTCATTCGCCCTC570.11452682338758287No Hit
AGCATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.11251758087201125No Hit
ACTGCCGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC560.11251758087201125No Hit
TTTCATGGGGACAATTTTCAAACACTTCAGAATAAATCTGATGACT560.11251758087201125No Hit
GTTAATGGGACACAATTTATCCTCTGTACAGGAAATCCAGGCACAA560.11251758087201125No Hit
GGTTTAGGGGGGGATAGGTGCACTGGGAGTGACCACAGAGGTCAGG560.11251758087201125No Hit
CTTACTGGGGTTCTTTCAAGGGAGAATTAAGTTAAAGCCAGATTGT560.11251758087201125No Hit
CTTTCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.11251758087201125No Hit
TAGTCCGGGAGGGCGGCGCGTGGTCTACGCCGAGTGACAGAGACGC560.11251758087201125No Hit
CAAATGGGGCCCTGACAGTTCCTGAGCTCACCCAGCAGATGTTTGA550.11050833835643961No Hit
CTAACTGGGAGATGGCGCCAGGAGCGGAACAGCGCCCTCGCCACCG550.11050833835643961No Hit
ATACCTGGGACCTCAGCAACAATGGTATCGAGGTTATCGAGGGCCT550.11050833835643961No Hit
ATGACTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT550.11050833835643961No Hit
ATTATAGGGGCCTTGGGTGCAGTCGTCACGAGCGTCTGGCCAGCAG540.108499095840868No Hit
CGTACGGGGTTCTTGGCATGGTCCTGCCCTACCTCATGGGATGGGC540.108499095840868No Hit
GCTATCGGGAGAGATACTCCTGAGAATAACCCAGATACTCCATTTG540.108499095840868No Hit
TTTGGTGGGGGAGCACGGGTGAAGAATCTCTGCGGGTCCTGGCCTT540.108499095840868No Hit
GCTACTGGGTTTTCGCAGGGGGTGTCGGGTCCGGAGCGGGGCTGAG540.108499095840868No Hit
ACCATTGGGGGGATACTTAATTGTATGTTTCTGAAGTTTTCTGGTT540.108499095840868No Hit
GTCAATGGGGAGACGGCTGGGCTTTGCGACATCGTCGGATGTCATA540.108499095840868No Hit
TGAGCTGGGACTGGAGATCGAGGTGGGGAATTACAGGGAAGAATAC540.108499095840868No Hit
ATTACCGGGACTCCAGTCTGCTTTTTGTCTCCCTTAAGATTTCCTT530.10648985332529635No Hit
TAAAGAGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA530.10648985332529635No Hit
CATTGAGGGGGCTCCGGGCCTCCCAGTGGCACAGGTCTCCACCGCT530.10648985332529635No Hit
AACCCCCACAGGGAAGACGACTTTGAGGAACTCCAGTATTTCCCCA520.10448061080972475No Hit
TGCGCGGGGTCTTTAAAGCCAAGAAAGTAGTAATTAAGTAGCCTAG520.10448061080972475No Hit
AAAGCCGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG520.10448061080972475No Hit
GACTTTGGGATATATCAATGATGACGAGACGTAATTCGTGAAGGAA520.10448061080972475No Hit
CATCCAGGGGGTAGGGGTTGGCGTGTGTGCGACCCCGCTAGGTTGG520.10448061080972475No Hit
ATGACAGGGGCCTTTTGCGGCCATCGGTGGATCGCAGCCGCCAAAA520.10448061080972475No Hit
GTTTTTGGGGACTCTCTCCAGCTGACAGGCACAAAGCCGGTTGCCA510.1024713682941531No Hit
TCGGCCGGGAAGTACAGCCCTGACTGCACCATCATCGTGGTTTCCA510.1024713682941531No Hit
CAACGGGGGGAGTGCTCCAGGGCAGCGGAACGGGGTGACCCTGAGT510.1024713682941531No Hit
CGCTTCGGGCACTGGGCGAACAGCAACGTTATAACGGCCACTCAGT510.1024713682941531No Hit
AGTACAGGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTT510.1024713682941531No Hit
GACGCTGGGGGTGCATCCCATTTCCACCATGATTAAGGGTCTCTAT510.1024713682941531No Hit
TTGGCTGGGTGAGAATGAGAGTTTCCGAGTTCGCCTTACTGCTCAA510.1024713682941531No Hit
AACCGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.1024713682941531No Hit
GTTTATGGGTCCTTCTAACATCAGGTCTAGTAATATGATTTCACTA500.10046212577858146No Hit
CGTTATGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT500.10046212577858146No Hit
TTATCAGGGGTAGTATGCAATGGTTTGATTTATCACATGACAAACT500.10046212577858146No Hit
TTCGGGGGGGTTGAATTTTTAACTTCTTATTGTTTTTGCATTGCTT500.10046212577858146No Hit
TTTAATGGGGATCATCATGCTTCCAGATGAGCACGTTGAACTGAGT500.10046212577858146No Hit
GTTGTAGGGCCACTGTCATTCGCCATAGAAGCCGATACCGTGAAAG500.10046212577858146No Hit
TTTAGTGGGAGCTGGGAGGGAGTAGGCGCTACGTCACTTACTGGGT500.10046212577858146No Hit
CGCTAAGGGATTCTGGCTCACTCAGCCACTCTCCAGGACAGCTGCT500.10046212577858146No Hit
TCATGGGGATCTCAACGTTTGGGGAGGTGGAGTTCACCAGCATGGA500.10046212577858146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)