FastQCFastQC Report
Sat 31 Dec 2022
SRR5843160.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843160.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75841
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTATGGGGCTTTCTGCCGCCATCTTGGTTCCGCGTTCCCTGCAC1160.15295156973141177No Hit
TGTTAAGGGAGGGAGAGCCCTTTGACAGGCTGGGGAGGGACAGTTG990.1305362534776704No Hit
AGACTGGGGCACACACCTAGCACAGGTGGTGAGTGGGCTAAGCTAT850.1120765812687069No Hit
TGCACCGGGATTGCTTCCCAGACGGTGAAGAAAGTAATAGAGATCA850.1120765812687069No Hit
GAACGCGGGGCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCAG810.10680238920900305No Hit
CCTATTGGGGTTTTGAGACAGGGTTTCTCTGTATCCCTGGCTGTCC780.10284674516422515No Hit
TTTCAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC780.10284674516422515No Hit
AAAAGCGGGGGAAAGAGAAAGGGTTTTGTTTGTTTGTTCTCCTTAT770.1015281971492992No Hit
TGATCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.10020964913437322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)