FastQCFastQC Report
Sat 31 Dec 2022
SRR5843159.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843159.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72046
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTATGGGGCTTTCTGCCGCCATCTTGGTTCCGCGTTCCCTGCAC960.13324820253726785No Hit
TGTTAAGGGAGGGAGAGCCCTTTGACAGGCTGGGGAGGGACAGTTG840.11659217722010938No Hit
CCTGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC810.11242817089081976No Hit
CGGGTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT770.10687616245176693No Hit
CACATGGGGAAGAACTTTTATATCTTTGGCTATCTCAGCCCAGCTG760.10548816034200371No Hit
GAACGCGGGGCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCAG750.1041001582322405No Hit
TGCACCGGGATTGCTTCCCAGACGGTGAAGAAAGTAATAGAGATCA750.1041001582322405No Hit
TTTCAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC750.1041001582322405No Hit
AGACTGGGGCACACACCTAGCACAGGTGGTGAGTGGGCTAAGCTAT740.1027121561224773No Hit
ATTGTAGGGTCACGATGGTGATGGAGGGTGAACCTGAATGTCCCTG740.1027121561224773No Hit
ATCATGGGGGTTGGAGGCCAGGATAAGATTCGGCCTCTGTGGCGGC730.1013241540127141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)