FastQCFastQC Report
Sat 31 Dec 2022
SRR5843156.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843156.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74890
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG1130.15088796902123114No Hit
CTACTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1040.13887034316998262No Hit
CTCTTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT890.11884096675123515No Hit
CTCGCTGGGGGGTGAAGATGGCTGCCGCCCGGGCTGCGGCCCTGGG870.11617038322873548No Hit
ACAGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC820.1094939244224863No Hit
CACCCTGGCTGCTGATGTTATGAGACCTCGAAGAAGTGACCCTCCC810.10815863266123649No Hit
TCCACTTCTTTTTTCACCCAGTTGCCTTTAAACCAGACTCTAAACA810.10815863266123649No Hit
TGCTCAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT810.10815863266123649No Hit
AACCATGGGACCAGTGGGCTGAACACTGCTCTAGTGCATTGATCCA810.10815863266123649No Hit
TAGGCCGGGGATCTGCTGGGTCACCAAGGGCCCACGCTGGGGCCCA790.10548804913873681No Hit
CAATGAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA770.10281746561623714No Hit
CCAAAAGGGGCAAAGATACAGGTGGCATTTTTCTCCAGGCTTTAGC770.10281746561623714No Hit
TCGCTTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA760.10148217385498731No Hit
ACTAGCGGGACAGCCGCCCGGGAAAAGATGGCCGCGCCTGCAGCGT750.10014688209373748No Hit
TTGGGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA750.10014688209373748No Hit
TCGCTAGGGGAGGCGTCAAAGTGCGCCTGCTCATCAGCTGCTGGGG750.10014688209373748No Hit
ACACCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT750.10014688209373748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)