FastQCFastQC Report
Sat 31 Dec 2022
SRR5843150.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843150.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30858
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCATGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA410.13286667962926957No Hit
ATTTTAGGGGACTCTAGGGCTATGAGTCGAGGGCTAGGAGTACAGG370.1199040767386091No Hit
GCCGCTGGGGCTCAGGCGAGTAGCTAGCGCTCAGGCTCGGCAAGGA350.11342277529327888No Hit
GCATATGGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTT350.11342277529327888No Hit
AGACAGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.11018212457061377No Hit
GAATATGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC330.10694147384794866No Hit
ACACATGGGCTCCTATGGGCGTGCCCTGCAGGCATCTGCACTCAAT330.10694147384794866No Hit
TTTAATGGGCTCTTGGAACGCTGTGCTCAGTATAAGAAGGACGGTG330.10694147384794866No Hit
GAAAATGGGAGGAAGGGGGGCCCAGCAAGGTCATTCTTGGACCCTG310.10046017240261844No Hit
CCACTAGGGGCTATTTCCTCTTTCGGCCTTGCTTGCCGGCAGACTC310.10046017240261844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)