FastQCFastQC Report
Sat 31 Dec 2022
SRR5843145.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843145.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35218
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAATGGGATGATTAGCTTGGATTATCTATCACAGTGACTAGTGA570.1618490544607871No Hit
GCTAGTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC560.15900959736498382No Hit
GTATTTGGGAATAATAGCAGATAATGTCAGTCATAGTGTTGGCTAG390.11073882673632801No Hit
GCTTTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA390.11073882673632801No Hit
TGTCAAGGGGGGCCTGGACTGCTGTGTGTGCCCCACCTGCCAGCAG370.10505991254472144No Hit
CGCCAAGGGACTTCAGAGGGAAATGATCTGTAGCACCTACACACAT360.10222045544891817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)