FastQCFastQC Report
Sat 31 Dec 2022
SRR5843136.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843136.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57797
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC850.1470664567365088No Hit
TACAATGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT780.13495510147585515No Hit
CCAAAGGGTATGCCACAACTAGATACATCAACATGATTTATCACAA730.1263041334325311No Hit
CTCTTTTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAA700.12111355260653667No Hit
TTAAGCGGGGTATGCAAGGGCAGTTAGATTTTTACACCCATGCAAA690.11938335899787186No Hit
TACAATGGGGCAACATGAAGGAAGTGTTCACCCGATTCTGCACCGG680.11765316538920705No Hit
CGGTTTGGGGGGAGAAGGTGAAGATGGCTGCCGCCCGGGCTGCGGC660.11419277817187744No Hit
ATTTATGGGGGATATTGTGAGTAATATAGATTGGCGCTAGTAGATC640.11073239095454782No Hit
CCACGAGGGGCATCCGCCAGGTCATCACCAACCACAAGCAGGTCCA640.11073239095454782No Hit
GGCTACGGGGGCGTCCAGCCGGCTGCGGAGCATCCCGGGCGGCGCG640.11073239095454782No Hit
ACTGCAGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC630.10900219734588301No Hit
ACCGCCGGGATATAGGAACATGCCCGGAGAGACCTAACCTGTATGT630.10900219734588301No Hit
CACAATGGGGAAAGGGGTCCCCCGTGCTGGAGCCTTAGACTCAGAC630.10900219734588301No Hit
GCTACAGGGATGAGGTAGCAGTTACTTTGTGATAATCTTGACACTG630.10900219734588301No Hit
TCATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.10727200373721821No Hit
TTCCAGGGGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAATTGCG620.10727200373721821No Hit
CCCACCGCAGTCATGCCTCGGGGAAGCCGCAGTGCGGCTGCCAGGC610.10554181012855338No Hit
ACTGGGGGTGCTCGGCGCGCGGCGCGCTGCGCGCTGCTGAAGGCTG610.10554181012855338No Hit
TGAGCTGGGCTGGCAAGGAAAGGTTGGGGTGTGCTGGCTGAAGGAG610.10554181012855338No Hit
ACTCGTCGGGGGGTCCTGGCAGTGTATTGTAAGCTAGTGATCAAAC600.10381161651988857No Hit
TCCTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC590.10208142291122377No Hit
TATCCAGGGGGGAATTCCGCCGGATAAAGGCTTCTTCGGTACTATA590.10208142291122377No Hit
CGGTAGGGGGTACCATGGTAATGAAATGACATAAGGCATGCTAAGG590.10208142291122377No Hit
ACTCTAGGGGAAGGAACCTACCAAGGCCACCACACTCCTATTGTAC590.10208142291122377No Hit
AAATTAGGGGGGTGCTGCGGCGCGGATAAGAGCCGCACCGCGCTTG580.10035122930255895No Hit
CTGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.10035122930255895No Hit
TGACTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA580.10035122930255895No Hit
TCGTTTGGGCAAGTACCAGGATCGACTGGCCACACCAGGCTTGATG580.10035122930255895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)