FastQCFastQC Report
Sat 31 Dec 2022
SRR5843135.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843135.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54533
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCGGGGTATGCAAGGGCAGTTAGATTTTTACACCCATGCAAA810.1485339152439807No Hit
CCACGAGGGGCATCCGCCAGGTCATCACCAACCACAAGCAGGTCCA690.12652889076339097No Hit
CACAATGGGGAAAGGGGTCCCCCGTGCTGGAGCCTTAGACTCAGAC690.12652889076339097No Hit
TCAGCGGGGGATCTTTAGAGGGGACTACTCCGGAAAAAAAGAACCT620.11369262648304695No Hit
ATAAACGGGGAGCCTCAGTAAAGAGACAAGGAGAGAGAGAAAGGGC610.11185887444299782No Hit
CGATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.11185887444299782No Hit
AACTATGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG600.11002512240294868No Hit
GCTACAGGGATGAGGTAGCAGTTACTTTGTGATAATCTTGACACTG600.11002512240294868No Hit
ACTGGGGGTGCTCGGCGCGCGGCGCGCTGCGCGCTGCTGAAGGCTG590.10819137036289952No Hit
CTACCTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA580.10635761832285039No Hit
CGCAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.10635761832285039No Hit
AATCGCGGGACTTTGGAAACGGAAATGCTGAGCCTCCATGACGAAC580.10635761832285039No Hit
CCAAAGGGTATGCCACAACTAGATACATCAACATGATTTATCACAA580.10635761832285039No Hit
TACTTTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA570.10452386628280123No Hit
CCAAAGGGGACGGGAGGGATGGTTAAGGTACAAAGGCTAGAAACTT570.10452386628280123No Hit
TGACTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA570.10452386628280123No Hit
ACTCTAGGGGAAGGAACCTACCAAGGCCACCACACTCCTATTGTAC570.10452386628280123No Hit
TATGTTGGGGACTTCCTTCCGGAAGTGACCCACGTGCTTCTTATTT570.10452386628280123No Hit
TACAATGGGGCAACATGAAGGAAGTGTTCACCCGATTCTGCACCGG560.1026901142427521No Hit
CGTGCATGGGCGTGCTCCTGGTGAGTGTTGTGGTGCTCTTCATCTT560.1026901142427521No Hit
GCCACAGGGCGATCTGGAGCCGGGCACACACACACACACACACACA550.10085636220270296No Hit
TCGTTTGGGCAAGTACCAGGATCGACTGGCCACACCAGGCTTGATG550.10085636220270296No Hit
GGATCAGGGGCTCCCACCCAGGTTCTTCCTCCTGCCAGGGCTGAAG550.10085636220270296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)