FastQCFastQC Report
Sat 31 Dec 2022
SRR5843126.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843126.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54339
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA750.13802241484017005No Hit
AGATAGGGGGCTGTGGGCAGAGATGTGCACACATTCGCGTTCATCA620.11409852960120724No Hit
CGTAGAGGGCATATAATATTTTCTAACAGTATCAAGTGGACAAATA600.11041793187213603No Hit
CTCTTTGGGAACGTAGCTTAAGGACAAAATGAAAAGTAAGATAGGT600.11041793187213603No Hit
AAATAAGGGGGCGGCGGCGGCAGCGTAGTTCCTAGCCGTGCAGCTG600.11041793187213603No Hit
CTTTAAGGGGAACCGTCTCGTAGCTTGAGGTCTGGGCGGGAGCGGC600.11041793187213603No Hit
AAACGAGGGGGTCTCACAGTGCTGTTTTTCTGTAGTCTGAGCCTGG600.11041793187213603No Hit
CTATTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.10857763300760044No Hit
TCATACGGGGCATGTGGGAGGAGAAGCAATTTAACTTACTGACAAA580.10673733414306484No Hit
CGATTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.10673733414306484No Hit
TGCATAGGGGTCCCCACCTGGGTGCCAGCACCAAGGAAGCCCAGAG570.10489703527852923No Hit
CGCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC570.10489703527852923No Hit
CGTTATGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCT570.10489703527852923No Hit
AAATTAGGGTCTGAAGGATTGGTGGTGTACCCCAAAGTAATTGAAC570.10489703527852923No Hit
CTTGGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC570.10489703527852923No Hit
TACAACGGGAAGTGGACCGAAAGAAATGCAAAATCCGGGAGGAGAT570.10489703527852923No Hit
AACTGTGGGGCTCTGCCCGGCGGACAGGATGGCGGGCAGAGGTAAG560.10305673641399363No Hit
CGCCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC560.10305673641399363No Hit
CACGCAGGATCGACACGGACCTCAGCAAAGTCTCCAAAATCTACCC560.10305673641399363No Hit
AGATATGGGGAGGGAGCTTTTCTCCAACCTCCTTACCCCCTCCTCG550.10121643754945804No Hit
ACAAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC550.10121643754945804No Hit
CTCAAGGGGAGACAGAGTTTCTGCCAGAGGCCGCCTTGGATGCGTG550.10121643754945804No Hit
AGCGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.10121643754945804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)