FastQCFastQC Report
Sat 31 Dec 2022
SRR5843125.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843125.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51843
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATGAGGGGTTTTAATTGGTGGTGTACTTTTTTGTATGTGGAATT700.13502305036359777No Hit
AACTGTGGGGCTCTGCCCGGCGGACAGGATGGCGGGCAGAGGTAAG660.1273074474856779No Hit
CATCACGGGATGTCAGTCAAGCTGTGATTGCAGGGATTCCCGCACA650.12537854676619795No Hit
TTCACTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA650.12537854676619795No Hit
AAATAAGGGGGCGGCGGCGGCAGCGTAGTTCCTAGCCGTGCAGCTG640.12344964604671796No Hit
CTTGGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC620.11959184460775803No Hit
GCATAAAGGGAGACGGTATCAACAGGAACATCCTCGTGTTAGATAT600.11573404316879811No Hit
TTCAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.11573404316879811No Hit
CGCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC580.11187624172983818No Hit
AAATTAGGGTCTGAAGGATTGGTGGTGTACCCCAAAGTAATTGAAC580.11187624172983818No Hit
AAACGAGGGGGTCTCACAGTGCTGTTTTTCTGTAGTCTGAGCCTGG580.11187624172983818No Hit
CATTGAGGGGGCCGCGGTGGCTGGCGCTACTTCGGAGGAGCCCGAC580.11187624172983818No Hit
CGTAGAGGGCATATAATATTTTCTAACAGTATCAAGTGGACAAATA570.1099473410103582No Hit
CGCGTTGGGAGAACAAAGTGGAAAACTTTATACATAAGCAAGAGAA570.1099473410103582No Hit
ACAAACGGGAAACCAAACCAAACCAAACCAAACCAAACCAAACCAA570.1099473410103582No Hit
CTACTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC570.1099473410103582No Hit
ATTAATGGGCTGTGGGCCAGGTTGCCTGTCTCAGTACTGAGACTCT560.10801844029087823No Hit
GCTTCTGGAGGGAACCAATCCCCAGCAGCACAAATAGGCCCCTAGA550.10608953957139827No Hit
GGCTAAGGGAGGATTTAGGGTAGAACTAAGTGATTTTTGAATTAGT550.10608953957139827No Hit
CATAAAGGGCAGCCTCACTGTACCTGGGCTCCTCCAGGAGAGGTGT540.1041606388519183No Hit
TCCTACGTGCAGCTGTGAAGGTTCCTCCATATCAGCTCGTGGGTGT540.1041606388519183No Hit
CACGCAGGATCGACACGGACCTCAGCAAAGTCTCCAAAATCTACCC540.1041606388519183No Hit
GCATTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.10223173813243833No Hit
TGGCCAGGTCTACTGACTCAAAGTCCATGAAAGTGGTGAGCCTGTT530.10223173813243833No Hit
TCTTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.10223173813243833No Hit
CCGAACGGGGGTGGCAGTACCGCCAAGCTGAGTACTTCCAGGATGA520.10030283741295837No Hit
ACATCCGGGGGGGTCCTGTCCGAAGGCACGCTCAGGAGCAGCCAAG520.10030283741295837No Hit
CCACCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.10030283741295837No Hit
CGATAAGGGGTGCTGGGGAAATGATGGGAAAGGCTCAGATCTGAGT520.10030283741295837No Hit
CTAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.10030283741295837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)