FastQCFastQC Report
Sat 31 Dec 2022
SRR5843124.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843124.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40488
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATACAGGGCCTTTTGCGGGTGGCGGCGAACGCGGAGAGCACGCCA660.16301126259632484No Hit
CGAACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.15560165975103735No Hit
CATCGAGGGGAACAAGATCACCATCACCAATGACAAGGGCCGCTTG630.15560165975103735No Hit
TTTTTCGGGGGACTGATGTCATCTTGAGCTCTTCATTTATTTTGAC610.1506619245208457No Hit
CAGGCTGGGGGGGGTTCCTGTCACTGAATCGAGTCGCTGCCCTGGA610.1506619245208457No Hit
TTCAATGGGCTCAGCGCATGACGGTCATAGAAGGAACAAATAAGAC590.14572218929065403No Hit
TATCAGGGGGACAGCCCGCCGCGCTCGCCTCTCCGCCCCGCGTCCA590.14572218929065403No Hit
CAACAGGGGTGCCTGCCTGCGAGGCACCTGCCTTGCAGCAGGCTCT570.14078245406046236No Hit
AAATACGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA570.14078245406046236No Hit
GGTTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.13831258644536654No Hit
TACACAGGGGTCTCATCTAGAGTGGAGTGTGCTTGTTTATGTCCCT550.1358427188302707No Hit
TGGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC540.13337285121517486No Hit
ACATCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA530.13090298360007901No Hit
ATATCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.13090298360007901No Hit
AAACCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.13090298360007901No Hit
ACTGTTATCTCCATTGCCCACATTGACAGTCTGAAGATGGAGACGG520.1284331159849832No Hit
GCAGCGCGGGGGTCCGGCGGCCGGGAAGATGGCGGACATTCAGACG520.1284331159849832No Hit
CTGTCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA520.1284331159849832No Hit
CGATGAGGGCTTCAACACAGCTTTAGGAACAATTTTTGGAGTTAAG520.1284331159849832No Hit
CTGAATGGGGCTCACAGGGGACCGTCCCCCAGTCACAGGAGTGCCT510.12596324836988737No Hit
ACCTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC510.12596324836988737No Hit
CGCACAGGGAACTCTCGCGAGGTTTCGCCTTCCGGGTGTCGCTGGG510.12596324836988737No Hit
TCGTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.12596324836988737No Hit
GACTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.12596324836988737No Hit
TGACCTGGGCACTCAGAGGCAAGTGACAGGAATCATCACCCAGGGG510.12596324836988737No Hit
TCTTGTGGGATCTGGTCACGGGTCCTACACCTCTCTTCCGGTCCTC500.12349338075479153No Hit
TGACTTGGGGGAAGCACCGCCGGGAGCCCCATGACAGAGGCGCCAG500.12349338075479153No Hit
AGCTATGGGAGCTACAAGCAGGGTCCGATCGTAATGGATGAGGATA500.12349338075479153No Hit
CGAACGGGGGGGCGTAGCCAGCTTTGCGCCGGGGTTCTGGGAGAGC500.12349338075479153No Hit
CGTTCCGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC500.12349338075479153No Hit
CTCTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA500.12349338075479153No Hit
TGCATTGGGGCACTGTGGGGTGGCACGCAGCCGCTGCTGAAGCGAG500.12349338075479153No Hit
TAAGCTGGGGATGCGGGATGCCGATGATCTGCAGAAGCGCCTAGCT490.12102351313969571No Hit
CCCGCATAGGGACTCCCAGTTCCTGTTAACAAGGTTGAATGATCCC490.12102351313969571No Hit
GCATGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCTGAC490.12102351313969571No Hit
TTCCGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.12102351313969571No Hit
GTACCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.12102351313969571No Hit
GTCGATGGGTCCTGTCCCTGGTTAAGATCTTTCAGGAAACTCGCAA490.12102351313969571No Hit
CGATAGGGGAGAGCTAATAAATTTCCATGATCACACACTAATAATT490.12102351313969571No Hit
ATGACTGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG490.12102351313969571No Hit
ACTGCTGGGGGAGGAAAAGATAAGGGTTGGCCTCCTTTGGATTTTA480.11855364552459988No Hit
AACGACGGGGGCCAAGGGGAAGGACTAAAGGGAGGGGCTGGACATA480.11855364552459988No Hit
CGTCCTGGGAAGTGCGCACGCGCAGCGACAAAAATGGAGGCTGCGG480.11855364552459988No Hit
CGCCGGGGGAGAGTAGCCATGGGGGCGCACCTGACCCGGCGCTATC480.11855364552459988No Hit
AACCACGGGGACCACACTAAGAAGCATTATTACAGAGTCCTGACAC480.11855364552459988No Hit
GGTATAGGGTGCAGTTGATATTTAACATTGATTTATTTTTGATCAT480.11855364552459988No Hit
CAAGGGGAGAGCGAGCAGAGCCTCGGCGGGCCACTGTCCCTCGCTG480.11855364552459988No Hit
AACCTTGGGGCTCTTTCCTTTTGCGGCCATCGGTGGATCGCAGCCG480.11855364552459988No Hit
CACTATTGGGGAGAGAAAGGGCGGGTCTACAGAACCAGGATAGCAG470.11608377790950405No Hit
GGTCTAGGGCGAGCTTACTTTACATCAGCCACTATAATTATCGCAA470.11608377790950405No Hit
CTTCACGGGGGAGTAGTCGTCGCTGCCGCCGCCGCCTCCGTTGTTG470.11608377790950405No Hit
CTTAGCGGGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTC470.11608377790950405No Hit
ACACCTGGGGATTGCTACTTTGTCCATAACAATTTCCCTGCCCTGG470.11608377790950405No Hit
ACTAGGGGGGGGCAAATCTACAGCAGGCTCTCCAGCTCTGATGTTC460.11361391029440823No Hit
GCTTCTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG460.11361391029440823No Hit
CCTCTTGGGACCTCTGGAACAACATTAAAAAGTGGCAGGCTATATA460.11361391029440823No Hit
TCTCTGGGGGACAGAGCGAGGTGTGGACAGTTCTGTTTTCGAGGCT460.11361391029440823No Hit
ACCAAAGGGGTGGACATTTCTGCAGTTAGTACACTGCTGTATGTTG460.11361391029440823No Hit
GAATTTGGGGGAATTTGGACAGTAAGACATGTGTACAAGAAATAAC460.11361391029440823No Hit
CTATGGGGGCTTTTTGCTGGGCGGTTGGCGGGGGGCGGGGGGACCT460.11361391029440823No Hit
TTCTACGGGCAAGTGTGACAAGACCGTATACTTCGCTGAGAAGGTG460.11361391029440823No Hit
TGGCATGGGGTTTTAAAGGCCATATTGCTAACCTCACCAAAAGGTT450.11114404267931238No Hit
TAATGAGGGCAAAGGGAAAGCTGTCACCAAGAAGAAGTATATTGGG450.11114404267931238No Hit
TAACTAGGGGGGAGGGAGGTAGTGTGTCTTTGGAATGTTCTAGTCA450.11114404267931238No Hit
GATTCTGGGAACATGGTCAAGCGAGACACGACCAAAGTGAAACACG450.11114404267931238No Hit
GCTCCAGGGTCCCTTTGACTTCCCGAGTTGGAGTACAAGAATGTTT450.11114404267931238No Hit
ATTTACGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACATG450.11114404267931238No Hit
GGAGACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.11114404267931238No Hit
CAAATTGGGATGGCTCGCTACGTGCGTGTCCTTCCAGTGTCCTGGC450.11114404267931238No Hit
CAAACAGGGGTACAGAATGGATTCGTCACAAATTTACCAAATCAAG450.11114404267931238No Hit
CACTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.11114404267931238No Hit
TATTACGGGCTCCGTGCGCCGGAAGCGAGCCGCTGGCGGTCGGGCT450.11114404267931238No Hit
ACTTTTGGGGGTCAGGTGTTGGACAGCAGGAATCAGTCCCCATGGA440.10867417506421656No Hit
CGCAAAGGGGAGTCCTGCTGAAGCCAGTTTGAGAAGACCACAGCAC440.10867417506421656No Hit
ACAACAGGGGGCACCGGCTGAACGATGACTGGGCGTACGGCAATGA440.10867417506421656No Hit
CAGTCTGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC440.10867417506421656No Hit
CGTTATGGGGAGCTCGGCAAGGCGCTGGGACGGTGGGGCTCTGCTT440.10867417506421656No Hit
CAACACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.10867417506421656No Hit
CAGCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.10867417506421656No Hit
CTCACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.10867417506421656No Hit
AGTAATGGGCTCTCTTTTCTCTGAGCCCTTCTCCCACAGGTGGGGC440.10867417506421656No Hit
CCACCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.10867417506421656No Hit
CTTAATGGGTCACTGTCCTTAGACTATTTTTCATCCCAGTTGCCTC440.10867417506421656No Hit
CTCCTCGGGGACATTTCAATTATTTTTTCTGTTTCAGACAAAATCA440.10867417506421656No Hit
CAGTCAGGGGACGTCATCCTGAACGAGCCTTCTGCGGATGCCCCAG440.10867417506421656No Hit
AATAAAGGGGACGCTCTTCCGATCTGAAGCCGGGGGAATTCTGGAC440.10867417506421656No Hit
TTTCCGGGAAGAGCCAGTTGTAAATAAATGGATGGAAATGAGAAAA440.10867417506421656No Hit
TTCTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.10867417506421656No Hit
AACCCCGGGGGCGCTGCAGAGTGATACATAACTAAACATTAGCACA430.10620430744912072No Hit
CACTTTTAGAGATTAGGAGACCCTTTGTGGAAGAGTGAACTTCACA430.10620430744912072No Hit
GACCCCTGGCCATGCCTGTCCCATCAAGTATAGCCCAGAAGAGATC430.10620430744912072No Hit
GTAGGGGCAACGATGTGCTCCGGCAACAGGTGGAAGATCTCAAGAA430.10620430744912072No Hit
CTCATCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.10620430744912072No Hit
AGGGCTGGGGAGCTCTGGTGGGTGTGCAGCCATGTGGTCACAGCCT430.10620430744912072No Hit
ACAACAAGGGCAGCAACGATGCGTACCACAGCCGCGCCATACAGGT430.10620430744912072No Hit
ATTACCGGGTACCTCAGGTGCTCCAGCAAAGCCCTCCTCTGCAGGG430.10620430744912072No Hit
TAGTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.10620430744912072No Hit
GGCAATGAAGACATTGTGATTACCGTGATTCCTGAAGAAATCGACC430.10620430744912072No Hit
CTGAATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC430.10620430744912072No Hit
GCTTATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA430.10620430744912072No Hit
CTTTTTGGGCACTATAATTCAATTACACTATTAACCCTTGGCCTAC430.10620430744912072No Hit
ATATCAGGGACTACCCCTGGGTCTTCGGCGATCTCGGCTGTCGTGG430.10620430744912072No Hit
TATAGCGGGGGAGACGGCGGCTGAGCCGCGGCAGGAGAGTACTGAG430.10620430744912072No Hit
GTAATAGGGGCGACTGCCCCTCCAGGATGTCTATAAAATTGGAGGC420.1037344398340249No Hit
GTGCAAGGGGGTTCCTTGCTTGCTGGAGAGAGAGCACTCCGCCGGG420.1037344398340249No Hit
AGTACAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA420.1037344398340249No Hit
GACATGGGTCCCAGCGAGAATTCAATGGGCTGGGCGACTGTCTCAC420.1037344398340249No Hit
GCCCTGTGAACCAGAGAAGGTAAGAGTAGACGAAGCAAGTGGAAGG420.1037344398340249No Hit
CATCTAGGGATGGAAAGGGCGGAACGATTCTCCAGGACAGCCAGCT420.1037344398340249No Hit
TCGCTTGGGGGCATGTGCAGAGTGAACCGCGGAGAAGGTGAAGATG420.1037344398340249No Hit
AATCCCCACTCGGCAAGATGAAGAACTTCAAACTTCTTACTGTTTT420.1037344398340249No Hit
AGCTTGGGGCCTTTTTTTCCCTCAGCGCTGGCCGCGGCCTCCCGGC420.1037344398340249No Hit
GAAGATGGGGCCCTGCAGGCATCTGCACTCAATGCCTGGAGAGGAC420.1037344398340249No Hit
CTAATCGGGCAGTCTGCCAGGAGGCGCAATCCCCCACCACGTACCC420.1037344398340249No Hit
CAAGAAGGGGTAGTACTAATTCTGAAGTGGAGTCAAACCGTCTGTG420.1037344398340249No Hit
AACCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.1037344398340249No Hit
ATTTCTGGGGGGAGCATTTGCTTGGAAAACTTTTTCTCTGACTTTT420.1037344398340249No Hit
GATGTGGGGTAATTTAAACCTAGGGATTTTATTTATTTTAGCAACA420.1037344398340249No Hit
CTTTACGGGGAAATGGTGAACCGATTCTTTTTAATTGGATCTTTTA420.1037344398340249No Hit
TTATGCGGGGACAATGACAGTGAGAACTGGAAGGAGGTGCATAAGA420.1037344398340249No Hit
TTCTATGGGGGACAAAAATGGAGGCTGCGGCCGAGCCGCTGCGGTC420.1037344398340249No Hit
TTAACAGGGAGCATGTAATTTTTACTATAACATGTGAGTGTGAAAA420.1037344398340249No Hit
CAACTAGGGAGAGGGAGATCAGGCCACCACGAGACAGAGATGGAGA420.1037344398340249No Hit
TTAATAGGGAGGGCCGGAAGTAGAACGGTGGCGGCGGCGGTGACTC420.1037344398340249No Hit
AACACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.1037344398340249No Hit
AACAGCGGGCTCAACAGGCCATGGATGTCCAGCTCCACAGCCCAGC410.10126457221892908No Hit
GAATTTGGGGGCTGAGAAGCTTCCTTGAGCTGTAAGAAAAAAATAA410.10126457221892908No Hit
TGCGTGGGGTGTTACCAAGGCTGCAGAGAAGCAGATGAAGGACAAG410.10126457221892908No Hit
CGCGCGGGGCGGCCGGCCAGCGTCATGGCGGCCGCCCATCTCCTCC410.10126457221892908No Hit
GATTAAGGGGACTCAGACTACCCAACATTCCATTCCTGTCTGGGAC410.10126457221892908No Hit
AGAAACGGGTACGAGAGAGATGAGGGCAACAACCTCCTCACTGAGA410.10126457221892908No Hit
AGCCTAGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCC410.10126457221892908No Hit
CCTTCAGCTTGTATGCCAACATTGACATCCTCAGACCCTACTTTGA410.10126457221892908No Hit
CTCAACGGGGGGGTCTGAGGTGCAGGCGCGAGGGGAGCGGGGTTGC410.10126457221892908No Hit
CCTTATGGGAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGC410.10126457221892908No Hit
GCTGCCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT410.10126457221892908No Hit
GCAAGTGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTTT410.10126457221892908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)