FastQCFastQC Report
Sat 31 Dec 2022
SRR5843123.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843123.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38734
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAGGGGGACAGCCCGCCGCGCTCGCCTCTCCGCCCCGCGTCCA760.19621004801982753No Hit
TGACTTGGGGGAAGCACCGCCGGGAGCCCCATGACAGAGGCGCCAG620.1600660918056488No Hit
TATACAGGGCCTTTTGCGGGTGGCGGCGAACGCGGAGAGCACGCCA590.15232095833118192No Hit
CACTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.14715753601487067No Hit
CTTAATGGGTCACTGTCCTTAGACTATTTTTCATCCCAGTTGCCTC570.14715753601487067No Hit
GCACATGGGACTTCGGCTCCCACGGCAGACATGGCGACATTGACAG560.14457582485671502No Hit
AAATACGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA550.1419941136985594No Hit
TTCATAAGGGGGCTCCAACGCACTGACCACACTGACTACCACCATA540.1394124025404038No Hit
CAAACAGGGGTACAGAATGGATTCGTCACAAATTTACCAAATCAAG540.1394124025404038No Hit
GGCAATGAAGACATTGTGATTACCGTGATTCCTGAAGAAATCGACC540.1394124025404038No Hit
GTACTAGGGGGTGGTGAATAAGGAAGCCGGGAGCGGCCCTGCCTCT530.13683069138224815No Hit
CGCACAGGGAACTCTCGCGAGGTTTCGCCTTCCGGGTGTCGCTGGG530.13683069138224815No Hit
TTCATAGGGGTACTACCCCCCTCTGACTGACGTAGAGTGCCATAAA530.13683069138224815No Hit
CTCCTCGGGGACATTTCAATTATTTTTTCTGTTTCAGACAAAATCA530.13683069138224815No Hit
TTTTTCGGGGGACTGATGTCATCTTGAGCTCTTCATTTATTTTGAC520.13424898022409254No Hit
CTCCACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC520.13424898022409254No Hit
CCTCTTGGGACCTCTGGAACAACATTAAAAAGTGGCAGGCTATATA510.1316672690659369No Hit
ACTGTTATCTCCATTGCCCACATTGACAGTCTGAAGATGGAGACGG510.1316672690659369No Hit
ACTGCTGGGAGAGCGCGGGACGTCTGTCTTCGAGTCCGAACGTTCG510.1316672690659369No Hit
ACTAAAGGGGCCATTACTGCCGGAAAAGGTCCAGCAGAGCTCAGCA510.1316672690659369No Hit
GTGCAAGGGGGTTCCTTGCTTGCTGGAGAGAGAGCACTCCGCCGGG500.12908555790778128No Hit
GTTTTTGGGAGGCCGAGGCCAAGATGGCGGCGCTGGCGGCTCCTGG500.12908555790778128No Hit
CGTCCTGGGAAGTGCGCACGCGCAGCGACAAAAATGGAGGCTGCGG500.12908555790778128No Hit
CCCGCATAGGGACTCCCAGTTCCTGTTAACAAGGTTGAATGATCCC500.12908555790778128No Hit
ACTGATGGGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAG500.12908555790778128No Hit
TTCCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC490.12650384674962567No Hit
CTCAACGGGGGGGTCTGAGGTGCAGGCGCGAGGGGAGCGGGGTTGC490.12650384674962567No Hit
CACTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.12650384674962567No Hit
CCTTATGGGAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGC490.12650384674962567No Hit
AGGTTTGGGAGTGATGAGCTACGACCGCGCCATCACCGTCTTCTCG480.12392213559147003No Hit
GTATAAGGGGGGGAGAAGAAACAGGATGGGGACAGTTGCCAGGCAG480.12392213559147003No Hit
CTTAGCGGGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTC480.12392213559147003No Hit
TTCAATGGGCTCAGCGCATGACGGTCATAGAAGGAACAAATAAGAC470.1213404244333144No Hit
AACGTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.1213404244333144No Hit
CGAACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.1213404244333144No Hit
AGCTATGGGAGCTACAAGCAGGGTCCGATCGTAATGGATGAGGATA470.1213404244333144No Hit
CTAATCGGGCAGTCTGCCAGGAGGCGCAATCCCCCACCACGTACCC470.1213404244333144No Hit
CCAAATGGGGTTCCACGAATCCAACCAGTGTGCCTCCCACAAGGAA470.1213404244333144No Hit
GTCGATGGGTCCTGTCCCTGGTTAAGATCTTTCAGGAAACTCGCAA470.1213404244333144No Hit
TCGCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.1213404244333144No Hit
CTCTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA470.1213404244333144No Hit
AAACCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.1213404244333144No Hit
CAGGCTGGGGGGGGTTCCTGTCACTGAATCGAGTCGCTGCCCTGGA470.1213404244333144No Hit
ACTTCAGGGCTGCTTCGTGTCGGCACGAAGTGTCTTCCGATGCAGT470.1213404244333144No Hit
ATTCATGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT460.11875871327515876No Hit
ATTTACGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACATG460.11875871327515876No Hit
TGTCCAGGGGCAGGTGAATGCTGTCACCGTGCACACACTCCTGGAT460.11875871327515876No Hit
ACAAGAGGGGAAGCCAAACAGATGATTGCCATTGCTGATGAGAACC460.11875871327515876No Hit
CTGTCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA460.11875871327515876No Hit
TCAAAGGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAAT460.11875871327515876No Hit
ACACCTGGGGATTGCTACTTTGTCCATAACAATTTCCCTGCCCTGG460.11875871327515876No Hit
TGTTATGGGGGCCTGTGAGGGGTGATCTATAGGCATGGGGGCTGGT450.11617700211700316No Hit
CGTGATGGGGAGTCCGGGTGTGCTGTCTCACTGGTGAGGTCGTGTA450.11617700211700316No Hit
GCTTAGGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC450.11617700211700316No Hit
TTGACTGGGGTGTGGGGCTGAGTGGCCTGGCTGCTGGCTTTGCCAT450.11617700211700316No Hit
GTTTCCGGGGCTTCCTGTAAGCGGCCAGAGGTCACCTGCCAAGATG450.11617700211700316No Hit
GCTCCAGGGTCCCTTTGACTTCCCGAGTTGGAGTACAAGAATGTTT450.11617700211700316No Hit
ATAATCGGGGACTGACTGTCTCCTACCAAGGAACCAAACCTGTCTC450.11617700211700316No Hit
CTTTGCGGGCACAGACCGAACCTTGGCACGATGCCCTCACTGCAGA450.11617700211700316No Hit
TTATGCGGGGACAATGACAGTGAGAACTGGAAGGAGGTGCATAAGA450.11617700211700316No Hit
CTTCTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.11617700211700316No Hit
GTTTGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.11617700211700316No Hit
TTCTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.11617700211700316No Hit
ACTTTTGGGGGTCAGGTGTTGGACAGCAGGAATCAGTCCCCATGGA440.11359529095884753No Hit
GGTTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.11359529095884753No Hit
ACAACAGGGGGCACCGGCTGAACGATGACTGGGCGTACGGCAATGA440.11359529095884753No Hit
ATCCACGGGGGCAGTTTGTCTTCGCTGATCGGTGAGACTTCGAGCA440.11359529095884753No Hit
TTTATAGGGGGAGACGAATTGCCAGAATTATTAACTGCGCAGTTAG440.11359529095884753No Hit
GCCTTCGGGGATCGACCTGTCTGGGAACCCTGTGCTTCGGATCTAC440.11359529095884753No Hit
GATGTGGGGTAATTTAAACCTAGGGATTTTATTTATTTTAGCAACA440.11359529095884753No Hit
CATCGAGGGGAACAAGATCACCATCACCAATGACAAGGGCCGCTTG440.11359529095884753No Hit
CTTTACGGGGAAATGGTGAACCGATTCTTTTTAATTGGATCTTTTA440.11359529095884753No Hit
ACCAAAGGGGTGGACATTTCTGCAGTTAGTACACTGCTGTATGTTG440.11359529095884753No Hit
TAACTAGGGGGGAGGGAGGTAGTGTGTCTTTGGAATGTTCTAGTCA430.11101357980069189No Hit
TGCGTGGGGTGTTACCAAGGCTGCAGAGAAGCAGATGAAGGACAAG430.11101357980069189No Hit
AACCACGGGGACCACACTAAGAAGCATTATTACAGAGTCCTGACAC430.11101357980069189No Hit
CGAACGGGGGGGCGTAGCCAGCTTTGCGCCGGGGTTCTGGGAGAGC430.11101357980069189No Hit
TCGTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.11101357980069189No Hit
CGTTCCGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC430.11101357980069189No Hit
AACACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.11101357980069189No Hit
ATGACTGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG430.11101357980069189No Hit
CGCCGGGGGAGAGTAGCCATGGGGGCGCACCTGACCCGGCGCTATC420.10843186864253626No Hit
ACCGCCGGGTCGGGAACTGGAGGAAGTATTAATGTACAACTCACCA420.10843186864253626No Hit
AAAGCTGGGCGATCTGCAAGCGGGATGACCCACCAAACTCATGCAT420.10843186864253626No Hit
TTCCGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.10843186864253626No Hit
ATGAATGGGGGCTAGCCTGGAGCGAACAGATCCAGTGGCCTCTGCC420.10843186864253626No Hit
CTTCACGGGAGGGCAGGGTGTATATCTCTCAGACCAGCAATCGTGG420.10843186864253626No Hit
TACACAGGGGTCTCATCTAGAGTGGAGTGTGCTTGTTTATGTCCCT420.10843186864253626No Hit
TACAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGA420.10843186864253626No Hit
TTTCTAGGGGCTTTGAGGAGTACATGAAAGAGCTAGGAGTAGGACT420.10843186864253626No Hit
AGCTCGGGCTATAGTATAAGTTTGAAATTTCGGTTGGGGTGACCTC420.10843186864253626No Hit
TTACTAGGGTGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCTG420.10843186864253626No Hit
GCACACTGGGGGGAATTCGAGCTCTTGATGATGATACTTAACCAAA420.10843186864253626No Hit
ACGCCTGGGGCTGCGAGGTACTAGCTTTGATGAGATCTGGTTTTCT410.10585015748438066No Hit
GGATGGGCTCTTGGAACGCTGTGCTCAGTATAAGAAGGACGGTGCT410.10585015748438066No Hit
AACGACGGGGGCCAAGGGGAAGGACTAAAGGGAGGGGCTGGACATA410.10585015748438066No Hit
ACATCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA410.10585015748438066No Hit
ATCAGGGGGAGTCATGCAGGTTTTAAGAAACTCCGGGTCGTGGCTC410.10585015748438066No Hit
TCTTGTGGGATCTGGTCACGGGTCCTACACCTCTCTTCCGGTCCTC410.10585015748438066No Hit
GGAGACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10585015748438066No Hit
TATCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC410.10585015748438066No Hit
CTGCTCGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT410.10585015748438066No Hit
GAGGCTGGGGGAAGTGAAACGCTCGGCTGGTCGGCCTTGCTCTCGA410.10585015748438066No Hit
TACATTGGGGCAGGGGCAGAGATGGGAGAGATTGAGCCAAATGAGC410.10585015748438066No Hit
AAAGTAGGGACTCTCGCATTTGGGTAAAAGTCGCACGGAGGAGCAG410.10585015748438066No Hit
CAGTCAGGGGACGTCATCCTGAACGAGCCTTCTGCGGATGCCCCAG410.10585015748438066No Hit
ACTTATGGGGGATGTGCGAGCGGCCATCTTGCTCCTGCCCCTGACA410.10585015748438066No Hit
ACTTGTGGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGT410.10585015748438066No Hit
ACTATTGGGGGTCCAGGGCGAGCCGGCCTGGACCGAGGAACGTCTC410.10585015748438066No Hit
TACATTGGGCAGTTCTATTAATAAATGGATCCTACTCTCTACAAAC400.10326844632622502No Hit
CTTACAGGGAGGCCCGAGTCTTGAGCCCCGCCCCGCCCCCCAAGTC400.10326844632622502No Hit
AACAGCGGGCTCAACAGGCCATGGATGTCCAGCTCCACAGCCCAGC400.10326844632622502No Hit
TGCCGTGGGGACAGGTGTTTGGGAAGCGCTCTGCCCGGCGGACAGG400.10326844632622502No Hit
ATGCCAGGGGATCTAATGGTGGGGGGGAATTCTGGACATTAATTAG400.10326844632622502No Hit
CAAATTGGGATGGCTCGCTACGTGCGTGTCCTTCCAGTGTCCTGGC400.10326844632622502No Hit
TCGCGAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA400.10326844632622502No Hit
CAACAGGGGTGCCTGCCTGCGAGGCACCTGCCTTGCAGCAGGCTCT400.10326844632622502No Hit
CAACCGGGGTATTCATATTGTCAGGTCTGTGTTCCATGACAGGCTG400.10326844632622502No Hit
ATTTCTGGGGGGAGCATTTGCTTGGAAAACTTTTTCTCTGACTTTT400.10326844632622502No Hit
CCAGGCATTATTAGAAAGTACCGGAAGAACCGGACAGAGACCCGGG400.10326844632622502No Hit
TGTCACGGGGGTATCCCCGAAGGGGCTAAGATCGCCCAAAATGTCA400.10326844632622502No Hit
TATCGCTGGGGAGGGGTCTAGGGTCCAGCAAGCCGAGTCAGGTCTT400.10326844632622502No Hit
TCCTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10326844632622502No Hit
CTTTTTGGGCACTATAATTCAATTACACTATTAACCCTTGGCCTAC400.10326844632622502No Hit
CTTCAAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT400.10326844632622502No Hit
ATCTCGGGGATCCCGGAAGTGGGTGAAGGCGGTTGTGGTCAGTGTA400.10326844632622502No Hit
ACTTCTGGGGTGCCTCGTTTCCTCCCTCTGTAGCATGGGGCTCGAG390.10068673516806939No Hit
ACCTTCGGGTACACACGCTGAAGATTGCTTCAATTGCTTTCCCCAG390.10068673516806939No Hit
GCTGGCGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCAG390.10068673516806939No Hit
TCAGCAGGGTTTCCGGACCTGGCCGAGCAGGAGGCGCCATCATGGG390.10068673516806939No Hit
CTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT390.10068673516806939No Hit
CTCATCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10068673516806939No Hit
AGGGCTGGGGAGCTCTGGTGGGTGTGCAGCCATGTGGTCACAGCCT390.10068673516806939No Hit
CTGCCAGGGACGGAGGAGCAGCGTCTGTTCTGCACCAACTCAGAGT390.10068673516806939No Hit
GATACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC390.10068673516806939No Hit
CCGCTTGAGTAAGGAAGATATTGAGCGCATGGTCCAAGAAGCTGAG390.10068673516806939No Hit
CTTCGCGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC390.10068673516806939No Hit
AGCCTAGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCC390.10068673516806939No Hit
GCTTCCGGGTGCCATGCAAGTGTGCCGCAATGTTCTACTGGACCCT390.10068673516806939No Hit
TAGGCTGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC390.10068673516806939No Hit
GTGCTGGGTGTGGCCCATGTCACGATGCTGTCTGCCAGCCAGAAGG390.10068673516806939No Hit
TTACTTGGGGATGAATTCGTGGCCACCCTCAGCTACACAGGAGTTC390.10068673516806939No Hit
AACCTTGGGGCTCTTTCCTTTTGCGGCCATCGGTGGATCGCAGCCG390.10068673516806939No Hit
TCCTATGGGGTCCTCTTTTTCTACCCACTGGACTTCACTTTTGTTT390.10068673516806939No Hit
CCCTCTCTGCTGGGCCCAGCCTGTACATCACCAGGTGTTAGAAACC390.10068673516806939No Hit
TCGCGTGGGGTCGGGTTTGGGGGCTGAAGAAAGCCTAGGTCTCTTA390.10068673516806939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)