FastQCFastQC Report
Sat 31 Dec 2022
SRR5843118.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843118.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53981
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCTAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT740.1370852707434097No Hit
CGTTACGGGGTGCAGTGGACTGTATATGAGGAGCAAGGAAGCAGCA670.12411774513254664No Hit
ATTGCAGGGATTAAAAACAATGAATTTATGAAATTCTTTGGCAAAT640.11856023415646247No Hit
TTGCGGGACTGAGTGCTTGGCTCAAGTTCCAATTCTAACATAAAAA640.11856023415646247No Hit
CCCTTAGGGATCCTCAGGCCTAGATACAGACTATACTCAGACCTAG620.11485522683907301No Hit
ACTCTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT610.11300272318037828No Hit
TGCTTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC600.11115021952168357No Hit
ATACTTGGGAGATTTTGGCTGTGGGGTTTTGATTGGAAGGGGCAGT600.11115021952168357No Hit
AGTACAGGGGTTCAATAGGAAAGTTAAGTTCTATCATGACTCACTC580.10744521220429411No Hit
AACTATGGGGCAGAAAGCGGGACGGCTGTTAGGTGGCTGGACTCAA580.10744521220429411No Hit
TCAGCGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT580.10744521220429411No Hit
CGTTGAGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC580.10744521220429411No Hit
CACGGTGGGACAATTCACAAATCACATCATATTCAAGAAGAAGGAA570.10559270854559938No Hit
AATTCAGGGACTTCAAGCACTAAGAAAAGCTGTTCAGACCAGTCTT570.10559270854559938No Hit
CGTTACGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT570.10559270854559938No Hit
GCCTAGGGTGTGGCTGTGACGTGGACCTCTCTTGCTCCTGCCCAGC570.10559270854559938No Hit
AACTTGGGGAGTCCTAACGCATTGCACTGTTTCCTTTCAAGCCCAG570.10559270854559938No Hit
ACATGTGGGATACTTCCCAAGAAGCGGCCATAGCCCAGATGCGAGG560.10374020488690466No Hit
AGTAAAGGGGACTGAGAAGCGTCGGGGAGCGCAGGCCCAACAGCCA560.10374020488690466No Hit
AGCAGCGGGGCACTTGGGGCAGATGAAACCGCTCATGTTTTCTACC550.10188770122820992No Hit
CTGCCCGGGGACATGCCTTTGAATGGCATGCAAAGTTTTAAGAAAC550.10188770122820992No Hit
AGCCTAGGGGATCACACTCTGGCCCCCAATTACAACCCACCTTCTG550.10188770122820992No Hit
ATTCATGGGCTCTTGACAGTCGTGAGCATATGACCACCAATGTCTT550.10188770122820992No Hit
AATTTTGGGAATGCGTTAGCGATTGTACGAGGGATAGTTATATCAT550.10188770122820992No Hit
GTTTATGGGATTTGGAGATACACTTTGCTGTGGATTAGTGTTGCTT550.10188770122820992No Hit
CGCTATGGGAAGTGGATATTAGCCCAAAAATTTAGAATACCCAAGA540.1000351975695152No Hit
TAACACGGGGATCTATTACCGGGGACAGCCTTTGTCAAGACTGAAG540.1000351975695152No Hit
ACGCCAGGGATCAGGATTTCAGATTGCTTTGGGTGGAAAAAACCAG540.1000351975695152No Hit
CGTGGGGGGATCTGACTTGAGAGCCAGAAAGAACATCTGGGTCGGG540.1000351975695152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)